Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto10g2319 ATGGCTTCCGATCTCCAAGTCCGAGCCAAGGAGGCCTTCGTCGACGACCACTTCGAGCTCGCCGCCGACCTCCTCACTCAAGCCATCGCTCTCAACCCTAACGACCCCGAGCTCTATGCCGACCGTGCTCAGGCCAACATCAAACTCCTCAACTTTACTGAGGCTATTTCTGATACAAACAAGGCAATTGAGTTGAACCCTCAACTATCGAAAGCATATCTGCGCAAAGGTATTGCATGCATGAATCTTGAGGAATATCAGACTGCTAAGATAGCTCTGATGAAGGGTGCTTCATTGGCTCCAGAGGATTCAAGATTCATTGCCAAGATCGAAGAGTGTGATAAGCTCATTGCAGCAGAAACTAGTACGATAACTATACAGGAAAAGATCAGCTCCCCTGAGGTTTCTTCAAAATATGTTAAGCCAGAGAATGATCTTCCAAAACAGGTTGCAGAATCAGTCGCTAAACCCAAATACAGGTTAGTGTGGTTTTCTTGGTTTTCGTGCTCTCTATTACGAGTTGTCATTTTATATGTGGAATTCTACCAGAAGCCTGATGAAGTGGTTGTAACCATATTTGCCAAGGGAATCCCAAGGGATAGAGTCTCTGTTGACTTTGGTGAACAAATAATAAGTGTTCGTATTGATGTTCCTGATGAACATGGATATTTCTTTCAACCTCGCTTATTTGGGAAGATAATACCTGCGAAATGCAGATATGAGGTTTTGTCTACCAAAATTGAAATTCGCCTTGCAAAAGCAGAACATTTAAATTGGACATCTCTAGAGTTCACCAGGCAAGTTGCAGTTCAACCAAAGGTTAATGTTCCCTCAGTTAGCGCAGGTCCAAGACCCACTTACCCATCCTCAAAACCAACAAGAGTAGATTGGGATAAGCTTGAAGCTCAAGTTAAGAAAGAGgagaaagaagaaaagcttGATGGAGATGCAGctttaaacaaatttttccGTGAAATATATCAGGATGCTGATGAGGACACAAGAAGAGCAATGAGAAAATCATTTGTGGAGTCAAATGGAACAGTATTGTCTACAAACTGGAAAGAAGTGGGATCAAAGAAGGTAGAGGGAAGTCCCCCAGATGGCATGGAGTTGAAAAAATGGGAATATtaa 1134 0.4171 MASDLQVRAKEAFVDDHFELAADLLTQAIALNPNDPELYADRAQANIKLLNFTEAISDTNKAIELNPQLSKAYLRKGIACMNLEEYQTAKIALMKGASLAPEDSRFIAKIEECDKLIAAETSTITIQEKISSPEVSSKYVKPENDLPKQVAESVAKPKYRLVWFSWFSCSLLRVVILYVEFYQKPDEVVVTIFAKGIPRDRVSVDFGEQIISVRIDVPDEHGYFFQPRLFGKIIPAKCRYEVLSTKIEIRLAKAEHLNWTSLEFTRQVAVQPKVNVPSVSAGPRPTYPSSKPTRVDWDKLEAQVKKEEKEEKLDGDAALNKFFREIYQDADEDTRRAMRKSFVESNGTVLSTNWKEVGSKKVEGSPPDGMELKKWEY 377
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto10g2319 377 Gene3D Tetratricopeptide repeat domain 1 144 IPR011990 GO:0005515
Sto10g2319 377 Gene3D - 177 265 IPR008978 -
Sto10g2319 377 ProSiteProfiles TPR repeat profile. 36 69 IPR019734 GO:0005515
Sto10g2319 377 Pfam Tetratricopeptide repeat 37 68 IPR019734 GO:0005515
Sto10g2319 377 Pfam Tetratricopeptide repeat 71 103 IPR019734 GO:0005515
Sto10g2319 377 SMART tpr_5 36 69 IPR019734 GO:0005515
Sto10g2319 377 SMART tpr_5 70 103 IPR019734 GO:0005515
Sto10g2319 377 SMART tpr_5 2 35 IPR019734 GO:0005515
Sto10g2319 377 CDD p23_CS_SGT1_like 180 263 - -
Sto10g2319 377 Pfam CS domain 180 253 IPR007052 -
Sto10g2319 377 SUPERFAMILY HSP20-like chaperones 175 270 IPR008978 -
Sto10g2319 377 ProSiteProfiles SGS domain profile. 286 377 IPR007699 -
Sto10g2319 377 SUPERFAMILY TPR-like 5 113 IPR011990 GO:0005515
Sto10g2319 377 ProSiteProfiles CS domain profile. 174 263 IPR007052 -
Sto10g2319 377 PANTHER PHOSPHATASE-RELATED 1 377 - -
Sto10g2319 377 Pfam SGS domain 296 375 IPR007699 -
Sto10g2319 377 PANTHER PROTEIN SGT1 HOMOLOG 1 377 IPR044563 GO:0051087
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto10g2319 Sto-Chr10 33421200 33426031 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto10g2319 1 100 U-box Gene Family AT3G07370 31.000 1.11e-07 50.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto10g2319 K12795 - gmx:100194421 500.36
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto10g2319 10 33421200 33426031 Sto10g2319 10 33421200 33426031 ECH