Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto10g2318 ATGGAAGCTATCTTCTTCACCACCAAACCTACTTCCCACCTCACTCTCTCCCACAAACCCtccttccctcctcctccttcctTCTCTACCCTCCGCCTCCTCCAACCTTCCCGCTCCTCCCAATTCACCGTCTGCGCCACCCAAAACCAAACCTCCCAGCAGCTCCAGAACGACGATGATGACTCCTACGGCGAAGTCAAAGGCATCATCGGAAGCAGAGTCTCCCAAAACGCCAACGGAATGGAGTACCTAATCGAGTGGAAAGACGGCCATACCCCTTCCTGGGTCCCCTCCGATTACATCGCCAAAGACGTCGTCGCCGAGTACGAAACGCCCTGGTGGACCGCCGCCAAGAAGGCCGACGAGTCCTCCCTCCGCCAACTCCTCTCCTCCGCCGCCGACGACGGCCGCGACATCGACGCGGTCGACTCCGACGGCCGGACCGCGCTCCACTTCGTCTCCGGCCTCGGGTCGGAGCCCTGCGTGAGGATGCTCGCCGAGGCGGGAGCGGATCTGGACCGCCGCGACAGCGGCGGCGGCCTCACGGCGCTGCACATGGCGGCGGGCTACGTCCGGCCGGGAGTCGTCCAGATCCTGGTCGATTCCGGAGCGGACGTGGAAGTCGAAGACGACCGAGGACGGACGGCGTTGGAGCTCGCGAGGGAGATCCTGAGCGCGACGCCGAGGGGGAATCCGATGCAGTTCGGGAGGAGAGTAGGGTTAGAGACTCTGATTCGAACCCTAGAATCCGCCATTTTCGAGTACGCGGAAGTGGAGGAGATCGTggagaagagagggaagggCGAGAATTTGGAGTATCTGGTGAAATGGAAGGACGGAGGAGTGAACGAGTGGGTGAAGGCGAAGTTCGTGGCGGAGGATTTGGTGAGAGACTACGAAGCCGGCGTGGAGTACGCGGTGGCGGAGGCGGTGGTCGGAGAAAGAGAAGGCGGTGACGGGAAGGAGGAGGTTCTCGTTAAATGGGCCGATATGGAAGAGCCCACGTGGGAGCCCAAGGAGAATGTGGATCCTCAGCTTGTTAAGGAGTTTCAATTGGCCCAACAAAATGGGAGTTCTGTTTTGAAAGTGGAGAATAGTAGCACCAGCGTATCATCGCTCCGATTCGCCGGAGAACCGACTCCGACTCCGGCGACCACCGACGCCGACGCCGATTTGCTCTTCCCGAGATGCTTACACGCGCCGCGAATCCCCGCCGGAAAATTCCCCCCCTGTTTCTCCCTTCTAAAAGAAGAAACAGAGACCACCGAAGGAGACGACGTCGTCGAGGAAGCCGTCGTGGACGACAAAATCCCCTCGGAAGCAGAAACCTTCACCATCCTCTCGCCGTGCCTTCTTGAGATTCTCACATACAGAGGCTTAATCAGCTTCAGATACTTCTGCAATACCTCCTTCGAGAATCGCTCCGATTTGGTCCCGTGGCTTCTCGAGCTCCCGTTTCTACTGAGCGAAACGGGAGTCGAAAACGGAGACGACGACGATTCGAACGCCCTCTTCGTCTCTTTCTTAAGCGACGTCGTTTGCTCTGTTTTTGTTGGAGGCGGCATTTCCTTGGGCTTCTTATTGGAGGCGAAGATTCGGAAGCTGTGGGCTGATTTGAGGAGAGCGATGGGAGATTGGGGCTTGGAGATAGGCTCAATTGGGAGGATTTTTCTCTTGGAAATGGGCTTTTCGGAAACTTCTTCATCATTATCGTCATCGTCATCGGCGTTGTCTTTGGTTTCTCTCGTTGATTTGTCTTCTTGTGGGTTGAAATCATGA 1779 0.5604 MEAIFFTTKPTSHLTLSHKPSFPPPPSFSTLRLLQPSRSSQFTVCATQNQTSQQLQNDDDDSYGEVKGIIGSRVSQNANGMEYLIEWKDGHTPSWVPSDYIAKDVVAEYETPWWTAAKKADESSLRQLLSSAADDGRDIDAVDSDGRTALHFVSGLGSEPCVRMLAEAGADLDRRDSGGGLTALHMAAGYVRPGVVQILVDSGADVEVEDDRGRTALELAREILSATPRGNPMQFGRRVGLETLIRTLESAIFEYAEVEEIVEKRGKGENLEYLVKWKDGGVNEWVKAKFVAEDLVRDYEAGVEYAVAEAVVGEREGGDGKEEVLVKWADMEEPTWEPKENVDPQLVKEFQLAQQNGSSVLKVENSSTSVSSLRFAGEPTPTPATTDADADLLFPRCLHAPRIPAGKFPPCFSLLKEETETTEGDDVVEEAVVDDKIPSEAETFTILSPCLLEILTYRGLISFRYFCNTSFENRSDLVPWLLELPFLLSETGVENGDDDDSNALFVSFLSDVVCSVFVGGGISLGFLLEAKIRKLWADLRRAMGDWGLEIGSIGRIFLLEMGFSETSSSLSSSSSALSLVSLVDLSSCGLKS 592
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto10g2318 592 CDD CD2_cpSRP43_like 254 301 - -
Sto10g2318 592 Gene3D - 108 251 IPR036770 -
Sto10g2318 592 SUPERFAMILY Chromo domain-like 254 301 IPR016197 -
Sto10g2318 592 SMART ANK_2a 145 174 IPR002110 GO:0005515
Sto10g2318 592 SMART ANK_2a 108 141 IPR002110 GO:0005515
Sto10g2318 592 SMART ANK_2a 179 208 IPR002110 GO:0005515
Sto10g2318 592 Gene3D - 302 354 - -
Sto10g2318 592 Gene3D - 56 107 - -
Sto10g2318 592 CDD CD3_cpSRP43_like 303 352 - -
Sto10g2318 592 ProSiteProfiles Chromo and chromo shadow domain profile. 306 362 IPR000953 -
Sto10g2318 592 ProSiteProfiles Ankyrin repeat profile. 145 177 IPR002110 GO:0005515
Sto10g2318 592 ProSiteProfiles Ankyrin repeat profile. 179 211 IPR002110 GO:0005515
Sto10g2318 592 Pfam Ankyrin repeats (3 copies) 116 210 IPR002110 GO:0005515
Sto10g2318 592 SUPERFAMILY Chromo domain-like 59 113 IPR016197 -
Sto10g2318 592 ProSiteProfiles Ankyrin repeat region circular profile. 145 176 - -
Sto10g2318 592 PANTHER HOMEOBOX PROTEIN WARIAI 2 359 - -
Sto10g2318 592 ProSiteProfiles Ankyrin repeat region circular profile. 179 211 - -
Sto10g2318 592 PANTHER SIGNAL RECOGNITION PARTICLE 43 KDA PROTEIN, CHLOROPLASTIC 2 359 IPR030300 GO:0009416|GO:0009507|GO:0045038|GO:0080085
Sto10g2318 592 SUPERFAMILY Ankyrin repeat 108 222 IPR036770 -
Sto10g2318 592 CDD CD2_cpSRP43_like 62 111 - -
Sto10g2318 592 SMART chromo_7 305 355 IPR000953 -
Sto10g2318 592 SMART chromo_7 254 304 IPR000953 -
Sto10g2318 592 SMART chromo_7 62 114 IPR000953 -
Sto10g2318 592 Gene3D - 252 301 - -
Sto10g2318 592 SUPERFAMILY Chromo domain-like 308 350 IPR016197 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto10g2318 116 226 Ion Channels AT2G25600 33.333 4.46e-08 54.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto10g2318 K12271 - gmx:100818382 458.373