Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto10g2242 ATGGCAGATCTTGCTAGCTACGGGAATGCCGACCGTGACTTAGAGCagGCCTTGATCGCTTTGAAAAAAGGTGCTCAACTGCTGAAATATGGTCGTAAAGGAAAGCCCAAGTTTTGTCCAGTTAGGCTTTCCACTGATGAATCTTCTTTAATTTGGATTTCAAGTAGTGGAGAAAGAAGATTGAAGCTATCTTCTGTCTCAAGAATAATTCCTGGACAAAGAACAGCTGTTTTCCAACGGTATTTACGTCCTGAGAAGGACTATTTGTCTTTTTCCCTTATTTATAACAACGGCAAGAGGTCCCTTGATTTGATTTGTAAGGATAAAGTTGAGGCAGAAGTGTGGATTGCTGGCCTCAAAGCATTGATATCTTCTGGTCAAGGTGGGCGGTCCAAAATTGATGGATGGAGTGATGGAGGCTTGTATCTTGATGATAGCAAAGACTTGACATCAAATAGTCCAAGTGAAAGTTCTGTTAGTACTTCACGAGATATTAACTCTCCTGACATTTCTGTGAGTCTCAATTTAAATACTTCTCCGAAGTCCTTTCGACCAGAGAATACTGTGAGTTCTGAAAGATCACATGCACTATCAGAACCAACAAATATGCAAGTGAAAGGGTCTGGTTCAGATGCTTTTCGAGTTAGTGTTTCTAGTGCCCCTAGCACATCAAGTCATGGGTCTGCACCAGATGATTGTGATGCTCTGGGGGATGTATACATATGGGGGGAGGTTATCTCTGATAACATTGTTAGAGTTGGTGCTGATAAGACTATCAACCATTTCAGCCCAAGGTTAGATGTCCTTCTCCCTAGGCCATTGGAGTCCAATGTAGTTTTAGATGTACATCATATAGCATGTGGTGTTAAACATGCCGCACTGGTCACGAGACAAGGTGAAGTTTTTACATGGGGTGAAGAATCTGGAGGACGCCTAGGACATGGTGTTGGGAAGAATGTGGTTCAACCTCGATTACTTGAAGCATTGGCTTCTGCTACTGTTGATTTTGTTTCCTGTGGGGAGTTTCATACCTGTGCTGTTACAATGGCTGGGGAACTATATACATGGGGTGATGGAACTCATAATGCTGGACTTCTTGGTCATGGCACTGATGTTAGTCATTGGATACCGAAGAGAATTTCTGGTCCATTGGAGGGACTTAAAGTTGCTATAGTCACCTGTGGTCCGTGGCACACAGCCTTGGTAACTTCAACTGGGCAACTCTTTACATTTGGTGATGGAACATTTGGTGTCTTGGGTCATGGAGATAGGGAGAATGTTTCATATCCTAGAGAAGTAGAATCGTTGTCAGGGTTAAGGACTATAGCTGTTGCATGCGGAGTGTGGCATACTGCAGCTGTGGTAGAGGTTATTGTGACACAATCCAGTGCAAGTGTATCATCAGGTAAATTGTTTACTTGGGGTGATGGAGACAAAAATCGCCTTGGACATGGAGACAAGGAGGCCCGACTTGAACCAACTTGTGTGCCTTCGCTTATCGattacaatttttataaaattgctTGTGGGCACAGTTTGACAGTTGGCCTGACAACATCAGGACGGGTTTTTACAATGGGAAGCACTGTTTATGGTCAGCTTGGGAATCCACAGTCTGCTGGAAAGCTGCCCTGCTTGGTCGAAGACAACCTTTCTGAAGAATCTGTTGAAGAAATTGCATGTGGTGCATATCATGTTGCAGTTTTAACGTCCAAAAATGAAGTTTATACATGGGGTAAGGGTGCTAATGGGAGGTTGGGTCATGGAGATGTGGAAGATAGAAAAGCACCAACATTGGTTGAAGCTTTGAAAGATAGACATGTTAAATTTATTGCATGTGGTTCAAACTACTCTGCTGCCATATGCCTTCATAAATGGGTATCTGGTGCTGAGCAGTCTCAGTGCTCTGCTTGTAGACAGGCATTTGGCTTCACTAGAAAGAGGCACAATTGTTATAATTGTGGGCTTGTTCATTGCCACTCGTGTAGTTCAAGGAAAGCACTAAGAGCAGCTTTGGCTCCTAATCCCGGCAAGCCATATCGTGTTTGTGATTCTTGTTATGCGAAATTGAACAAGATGGCAGAAGCTGGCATAAGTACTAGGAGGAATGCGATGCCTCGTTTGTCAGGTGAAAACAAGGACAGGTTAGACAAGTCAGAGATAAGGTTGGCCAAGTCCCCTGTGCCTTCTAATATGGATTTGATAAAGCAGCTAGATAGCAAGGCAGCCAAACAAGGGAAGAAGGCTGATACATTCTCCCTGGTTCGCAACTCACAAGCCCCATCTTTGCTGCAGCTAAAAGATGTTGTCTTGGCTACTGCTGGTGATCTAAGACGAACAGTTCCACGACCAGTTCTTACATCATCTGGAGTAAGTTCCAGGTCTGTGTCCCCTTTCTCTAGAAGACCAAGCCCACCACGTTCAGCTACGCCTATTCCAACAACATCGGGACTTTCCTTCTCAAAAAGTATAGCTGACAGTTTGAAGAAAACAAATGAACTTTTAAATCAAGAAGTGCTGAAGTTACGTTCTCAGGTTGAGAGCTTGAGACAAAGATGTGAATTGCAAGAATTAGAGCTTCAAAGGGCAGAAAAGAGAACTCAGGAAGCTATGGCACTTGCTGCTGAGGAGTCTGGTAAATCTAAAGCtgcaaaagaagttataaagtCACTTACAGCACAGCTCAAAGATCTAGCTGAGAGACTACCTCCTGGAGTTTATGATGCCGAGAACATCAGACCAGCTTACCCACCAAATGGTTTGGAGCCAAATGGCATCCACTATCCTGACTCCAATGGGGAGCACCACACCAGAGCAGAGTCAATCAGCGGCTCTAGTTTGGCCTCCATGGGACTTGAAACTTCTCTGTTGAATAGAACCGAGGGCACAGGAATCTATGGAACCAGTCTTTACCAGCACCGTGTCCTCATGCCTTCCAATGGGACAAATGAATATCCTGATACTGGTTCAAGATCAAGAAATGCTGTAATGGCTGCTAATAGTAATCAAATTGAGGCGGAATGGATTGAACAGTATGAGCCGGGTGTGTATATAACACTCATGGCCTTGCGCGATGGAACGAGAGATCTAAAACGAGTGCGATTCAGCCGACGAAGATTCGGAGAGCACCAAGCAGAGACTTGGTGGTCAGAGAATCGTGAGAAGGTATATGAAAGGTACAATGTTCGTAGCAGCACCGACAAATCTGCCAGCCAAACAGCAGCACGTAGAGCAGACGGTGCAATTTCACCGGTTTCATAA 3261 0.44 MADLASYGNADRDLEQALIALKKGAQLLKYGRKGKPKFCPVRLSTDESSLIWISSSGERRLKLSSVSRIIPGQRTAVFQRYLRPEKDYLSFSLIYNNGKRSLDLICKDKVEAEVWIAGLKALISSGQGGRSKIDGWSDGGLYLDDSKDLTSNSPSESSVSTSRDINSPDISVSLNLNTSPKSFRPENTVSSERSHALSEPTNMQVKGSGSDAFRVSVSSAPSTSSHGSAPDDCDALGDVYIWGEVISDNIVRVGADKTINHFSPRLDVLLPRPLESNVVLDVHHIACGVKHAALVTRQGEVFTWGEESGGRLGHGVGKNVVQPRLLEALASATVDFVSCGEFHTCAVTMAGELYTWGDGTHNAGLLGHGTDVSHWIPKRISGPLEGLKVAIVTCGPWHTALVTSTGQLFTFGDGTFGVLGHGDRENVSYPREVESLSGLRTIAVACGVWHTAAVVEVIVTQSSASVSSGKLFTWGDGDKNRLGHGDKEARLEPTCVPSLIDYNFYKIACGHSLTVGLTTSGRVFTMGSTVYGQLGNPQSAGKLPCLVEDNLSEESVEEIACGAYHVAVLTSKNEVYTWGKGANGRLGHGDVEDRKAPTLVEALKDRHVKFIACGSNYSAAICLHKWVSGAEQSQCSACRQAFGFTRKRHNCYNCGLVHCHSCSSRKALRAALAPNPGKPYRVCDSCYAKLNKMAEAGISTRRNAMPRLSGENKDRLDKSEIRLAKSPVPSNMDLIKQLDSKAAKQGKKADTFSLVRNSQAPSLLQLKDVVLATAGDLRRTVPRPVLTSSGVSSRSVSPFSRRPSPPRSATPIPTTSGLSFSKSIADSLKKTNELLNQEVLKLRSQVESLRQRCELQELELQRAEKRTQEAMALAAEESGKSKAAKEVIKSLTAQLKDLAERLPPGVYDAENIRPAYPPNGLEPNGIHYPDSNGEHHTRAESISGSSLASMGLETSLLNRTEGTGIYGTSLYQHRVLMPSNGTNEYPDTGSRSRNAVMAANSNQIEAEWIEQYEPGVYITLMALRDGTRDLKRVRFSRRRFGEHQAETWWSENREKVYERYNVRSSTDKSASQTAARRADGAISPVS 1086
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto10g2242 1086 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 351 405 IPR000408 -
Sto10g2242 1086 MobiDBLite consensus disorder prediction 1062 1086 - -
Sto10g2242 1086 MobiDBLite consensus disorder prediction 147 229 - -
Sto10g2242 1086 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 444 454 IPR000408 -
Sto10g2242 1086 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 299 350 IPR000408 -
Sto10g2242 1086 SUPERFAMILY RCC1/BLIP-II 236 626 IPR009091 -
Sto10g2242 1086 MobiDBLite consensus disorder prediction 785 803 - -
Sto10g2242 1086 CDD PH_PLC_plant-like 12 124 - -
Sto10g2242 1086 Pfam Transcription factor regulating root and shoot growth via Pin3 1005 1060 IPR013591 -
Sto10g2242 1086 PRINTS Chromosome condensation regulator RCC1 signature 301 317 IPR000408 -
Sto10g2242 1086 PRINTS Chromosome condensation regulator RCC1 signature 351 367 IPR000408 -
Sto10g2242 1086 PRINTS Chromosome condensation regulator RCC1 signature 392 408 IPR000408 -
Sto10g2242 1086 PRINTS Chromosome condensation regulator RCC1 signature 408 422 IPR000408 -
Sto10g2242 1086 PRINTS Chromosome condensation regulator RCC1 signature 510 528 IPR000408 -
Sto10g2242 1086 PRINTS Chromosome condensation regulator RCC1 signature 568 589 IPR000408 -
Sto10g2242 1086 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 392 402 IPR000408 -
Sto10g2242 1086 Pfam Pleckstrin homology domain 15 123 IPR001849 -
Sto10g2242 1086 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 631 700 IPR013083 -
Sto10g2242 1086 PANTHER REGULATOR OF CHROMOSOME CONDENSATION 13 954 - -
Sto10g2242 1086 PANTHER REGULATOR OF CHROMOSOME CONDENSATION 986 1067 - -
Sto10g2242 1086 Pfam FYVE zinc finger 625 691 IPR000306 GO:0046872
Sto10g2242 1086 Pfam Regulator of chromosome condensation (RCC1) repeat 468 515 IPR000408 -
Sto10g2242 1086 Pfam Regulator of chromosome condensation (RCC1) repeat 351 401 IPR000408 -
Sto10g2242 1086 Pfam Regulator of chromosome condensation (RCC1) repeat 299 347 IPR000408 -
Sto10g2242 1086 Pfam Regulator of chromosome condensation (RCC1) repeat 520 569 IPR000408 -
Sto10g2242 1086 Pfam Regulator of chromosome condensation (RCC1) repeat 406 454 IPR000408 -
Sto10g2242 1086 Pfam Regulator of chromosome condensation (RCC1) repeat 574 621 IPR000408 -
Sto10g2242 1086 ProSiteProfiles Zinc finger FYVE/FYVE-related type profile. 629 691 IPR017455 -
Sto10g2242 1086 Gene3D - 187 461 IPR009091 -
Sto10g2242 1086 SUPERFAMILY FYVE/PHD zinc finger 625 696 IPR011011 -
Sto10g2242 1086 ProSiteProfiles BRX domain profile. 1006 1061 IPR013591 -
Sto10g2242 1086 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 521 572 IPR000408 -
Sto10g2242 1086 CDD FYVE_like_SF 634 687 - -
Sto10g2242 1086 Gene3D - 462 630 IPR009091 -
Sto10g2242 1086 Pfam Transcription factor BRX N-terminal domain 876 911 IPR027988 -
Sto10g2242 1086 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 573 624 IPR000408 -
Sto10g2242 1086 SMART fyve_4 623 692 IPR000306 GO:0046872
Sto10g2242 1086 PANTHER REGULATOR OF CHROMOSOME CONDENSATION (RCC1) FAMILY WITH FYVE ZINC FINGER DOMAIN-CONTAINING PROTEIN 986 1067 - -
Sto10g2242 1086 PANTHER REGULATOR OF CHROMOSOME CONDENSATION (RCC1) FAMILY WITH FYVE ZINC FINGER DOMAIN-CONTAINING PROTEIN 13 954 - -
Sto10g2242 1086 Coils Coil 825 873 - -
Sto10g2242 1086 MobiDBLite consensus disorder prediction 784 816 - -
Sto10g2242 1086 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 406 457 IPR000408 -
Sto10g2242 1086 MobiDBLite consensus disorder prediction 147 230 - -
Sto10g2242 1086 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 469 520 IPR000408 -
Sto10g2242 1086 MobiDBLite consensus disorder prediction 922 942 - -
Sto10g2242 1086 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 285 295 IPR000408 -
Sto10g2242 1086 Gene3D - 13 129 IPR011993 -
Sto10g2242 1086 SUPERFAMILY PH domain-like 14 123 - -
Sto10g2242 1086 Coils Coil 881 901 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto10g2242 Sto-Chr10 32481429 32489677 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto10g2242 879 1079 Major Intrinsic Protein MIP AT1G31880 32.258 7.43e-17 81.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto10g2242 - - gmx:100783270 1805.42
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto10g2242 10 32481429 32489677 Sto10g2242 10 32481429 32489677 ECH