Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto10g2135 ATGTCCTTCCGGAGCATAGTTCGTGATGTAAGGGACAGTTTTGGAAGCTTATCAAGGCGGAGTTTCGAGGTAAGGCTTCCCGGCCATCACAGGGGGAAGTCACACAGTTCAGTCCATGAGTTGAGTGAACAGCCTCAAGTGCTACAGAACAGCCGCTGGGCTAGCCTGCCGCCCGAGCTTCTACGTGATGTTATTATGAGATTGGAAGAAAGTGAGAGCACTTGGCCTGCTCGTAAGCACGTGGTTGCATGTGCTGCTGTCTGCAAGTCTTGGAGAGAAATGTGCAAAGAAATTGTATGCAATCCAGAAATCTGTGGGAAAATTACTTTCCCTGTTTCCCTGAAGCAGCCTGGTCCTCGGGATGGAATGATCCAGTGTTTCATCAAGAGAGACAAATCTAATTTGACATATCACCTCTTCCTTTGCCTTAGTCCTGCTTTGCTTGTTGAAAATGGGAAGTTTCTTCTCTCTGCAAAACGTACCAGAAGAACAACTTGCACAGAGTATATTATATCGATGGATGCAGATAACATATCAAGATCTAGTAGCACATATATTGGAAAACTGAgGTCAAATTTTCTTGGCACAAAATTCTTAATATATGATACTCAGCCTCCCTATAATAATGCTCAGCTGTCTCTCCCGGGCCGTAGCCGTAGGTTCTATTCCAAAAAGGTTTCTCCGAAGGTCCCTAGTGGCAGCTACAATATTGCCCGTGTCACCTACGAGCTAAATGTGCTCGGTACTAGGGGCCCACGCCGGATGCAATGCACCATGCTCTCAATCCCAGAATCAGCCATTGCGCCTGGTGGCAGTGTCCCCGGCCAGCCTGAGCTTCTCCCCCGAGGCCAATCGATTGACAATTCCACTGATTTTAGCAGCTCTAGGTTTTCAGACATTACGTGGGCTGGCAACGAAGAAGAGGGAGGAGAGGGAAAGGAGATGCCACTGGTTCTCAAGAACAAGGCACCGAGATGGCATGAGCAGCTGCAATGTTGGTGCCTCAACTTTCGGGGGAGAGTCACTGTTGCCTCGGTCAAGAATTTTCAGCTGATTGCTGCAACACAGCCAACGTCACAGTTGGATCAAGATAAGATTATTCTTCAGTTTGGTAAGGTTGGCAAGGATATGTTCACGATGGACTATCGATACCCGCTTTCGGCATTTCAGGCTTTTGCCATATGCTTGACTAGCTTTGACACTAAACTAGCTTGTGAATAA 1221 0.4734 MSFRSIVRDVRDSFGSLSRRSFEVRLPGHHRGKSHSSVHELSEQPQVLQNSRWASLPPELLRDVIMRLEESESTWPARKHVVACAAVCKSWREMCKEIVCNPEICGKITFPVSLKQPGPRDGMIQCFIKRDKSNLTYHLFLCLSPALLVENGKFLLSAKRTRRTTCTEYIISMDADNISRSSSTYIGKLRSNFLGTKFLIYDTQPPYNNAQLSLPGRSRRFYSKKVSPKVPSGSYNIARVTYELNVLGTRGPRRMQCTMLSIPESAIAPGGSVPGQPELLPRGQSIDNSTDFSSSRFSDITWAGNEEEGGEGKEMPLVLKNKAPRWHEQLQCWCLNFRGRVTVASVKNFQLIAATQPTSQLDQDKIILQFGKVGKDMFTMDYRYPLSAFQAFAICLTSFDTKLACE 406
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto10g2135 406 Pfam Tub family 114 401 IPR000007 -
Sto10g2135 406 PANTHER TUBBY-RELATED 1 406 - -
Sto10g2135 406 SUPERFAMILY Tubby C-terminal domain-like 102 406 IPR025659 -
Sto10g2135 406 PRINTS Tubby superfamily signature 169 185 IPR000007 -
Sto10g2135 406 PRINTS Tubby superfamily signature 185 209 IPR000007 -
Sto10g2135 406 PRINTS Tubby superfamily signature 234 261 IPR000007 -
Sto10g2135 406 PRINTS Tubby superfamily signature 319 336 IPR000007 -
Sto10g2135 406 PRINTS Tubby superfamily signature 337 353 IPR000007 -
Sto10g2135 406 PRINTS Tubby superfamily signature 363 382 IPR000007 -
Sto10g2135 406 PRINTS Tubby superfamily signature 384 406 IPR000007 -
Sto10g2135 406 Pfam F-box domain 53 101 IPR001810 GO:0005515
Sto10g2135 406 Gene3D Tubby Protein; Chain A 110 406 IPR025659 -
Sto10g2135 406 PANTHER TUBBY-LIKE F-BOX PROTEIN 10-RELATED 1 406 - -
Sto10g2135 406 ProSitePatterns Tub family signature 2. 391 406 IPR018066 -
Sto10g2135 406 Gene3D - 47 101 - -
Sto10g2135 406 SUPERFAMILY F-box domain 47 96 IPR036047 GO:0005515
Sto10g2135 406 ProSitePatterns Tub family signature 1. 337 350 IPR018066 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto10g2135 Sto-Chr10 31193207 31198065 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto10g2135 1 406 TUB Transcription Factor Family AT1G76900 68.791 0.0 595
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TUB Sto10g2135 Tub 4.4e-117 CL0395
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto10g2135 K19600 - pvy:116120437 700.664
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto10g2135 10 31193207 31198065 Sto10g2135 10 31193207 31198065 ECH