Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto10g2107 ATGGACATTGTTTTCGATAGCATTCGGCATCTCCATCCACTGTGTCAAAATTGGACAATAAAGGTCCGAGTGGTCAGGATGTGGACTATGTCCCCAATGCCAAAAACATCACCTGGTCCTTCAATGGAGATGGTCCTTTGTGACCGTGAGGGTTTCAAAATAGCTGCATTTGCTAAAAGTCCGTTCGCTGCTAAGCTAACCAACGTGCCGAAAGAAGGTTCCGTGTATGTAATGTCTAAGCTAAATGTTGGCACTAATACTGGAAGCTTTCGTGCATCACATCATCAATTTAAACTAAACCTCCAAATGAGTACTGGATTGCCGAAGCTCACGACGACAATACTATTCACCAATATGGacGTGATTGGTCGTCTCTGCAACATGTCTAACATTCATGAATCACCATCATCCAATCCAAAGTCCAGACATGTGAACATTGAGTTAGAGGATCAGTCTAATTCCAAATTGTCAGTCACTCTCTGGGGTGAATTCGTAAACCAACTATCTCAATTTATGAACAAAAATGTTGGGGGTGCAGTCATCATTGCAATCCAATACTGCAAAATCAAAGAGTACAATGGCAGCCGGACTCTGTCCAACTCTATGTATGCGTCCCGCATGTTCATCAATGCTGACATTGAAGAAATTAGGGCATTCCATGACGCACTCCAGCCCGAAGAATTAACAATACTTGtcaatcttaataataaccccaTGGTTGCTGCATCTCCTTTACAAGCTACATTTGACGGATGTGCACTGTCGAACGTATATGATCTATACAGTACTGGTGATGGAGATGTATTGGTATTTCTTGCATCGGTTCTTAAGCTCAATAGTGACAAAGGATGGTTCTACGATTCCTGTAAAAAATGTGCTAAAAAAATTGAACCCAATGGTCCAAGTTTTTACTGTACCAAGTGTGATAGCATGGTGCATTCTTCTGTTTCcatGTTCAAGATTGAACTTCTGGTAGTTGATGATTCTGGTACAGTGAATATAATTGTATTTGACCGTGATGCTACTCAATTGATTAGTATGTCTGCTATTGAGCTTCGCAAGGAACATCTTCAGTCTGTTGACGATCCTCGACAAATGCCGGAGAAGTTAGATGCGTTCTTAGGCCAGACATTATTGTTTAAAGTTGCCGTCAAGAGTTATTCATGGACTTCTGCCCTTTCTTTCATTGTCCAACGATTGACAAATGATCCTGAACTCATTGCTAAGTACACGGCAATCAAGAAAGCAAGGGATGCTAAGACTAATGGGGAAGCTTTCAGTGAATCTGCAATAGTTTCGGTTGATCTCAGCTCAGTGGATGACAGTTTGATTACGCCAGTTCAATCCAAGTCAAAAATTGCTATGGAATTGGATGGAAGGAGGCCTTCATTTGACAACAATAAACCTTCACCTGCTGGTGAAAATAATGGTAGTGGCAAAAGATCCATAACTGACTCTGCCGATGGTGATCCAATGTTAGATGAATCGTTGAAGAACCAGGATCAGCGGGTGAAAAGGGTTAAGGATGAGAAGTGA 1536 0.4095 MDIVFDSIRHLHPLCQNWTIKVRVVRMWTMSPMPKTSPGPSMEMVLCDREGFKIAAFAKSPFAAKLTNVPKEGSVYVMSKLNVGTNTGSFRASHHQFKLNLQMSTGLPKLTTTILFTNMDVIGRLCNMSNIHESPSSNPKSRHVNIELEDQSNSKLSVTLWGEFVNQLSQFMNKNVGGAVIIAIQYCKIKEYNGSRTLSNSMYASRMFINADIEEIRAFHDALQPEELTILVNLNNNPMVAASPLQATFDGCALSNVYDLYSTGDGDVLVFLASVLKLNSDKGWFYDSCKKCAKKIEPNGPSFYCTKCDSMVHSSVSMFKIELLVVDDSGTVNIIVFDRDATQLISMSAIELRKEHLQSVDDPRQMPEKLDAFLGQTLLFKVAVKSYSWTSALSFIVQRLTNDPELIAKYTAIKKARDAKTNGEAFSESAIVSVDLSSVDDSLITPVQSKSKIAMELDGRRPSFDNNKPSPAGENNGSGKRSITDSADGDPMLDESLKNQDQRVKRVKDEK 511
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto10g2107 511 CDD RPA1_DBD_A_like 19 105 - -
Sto10g2107 511 SUPERFAMILY Nucleic acid-binding proteins 260 389 IPR012340 -
Sto10g2107 511 Gene3D - 5 107 IPR012340 -
Sto10g2107 511 MobiDBLite consensus disorder prediction 468 483 - -
Sto10g2107 511 MobiDBLite consensus disorder prediction 487 511 - -
Sto10g2107 511 CDD RPA1_DBD_B_like 120 219 - -
Sto10g2107 511 Gene3D - 108 226 IPR012340 -
Sto10g2107 511 Pfam Replication factor-A C terminal domain 273 389 IPR013955 -
Sto10g2107 511 Pfam Domain of unknown function DUF223 43 112 IPR003871 -
Sto10g2107 511 Gene3D - 252 410 IPR012340 -
Sto10g2107 511 SUPERFAMILY Nucleic acid-binding proteins 117 226 IPR012340 -
Sto10g2107 511 SUPERFAMILY Nucleic acid-binding proteins 5 105 IPR012340 -
Sto10g2107 511 MobiDBLite consensus disorder prediction 457 511 - -
Sto10g2107 511 CDD RPA1_DBD_C 259 385 IPR013955 -
Sto10g2107 511 Pfam Replication protein A OB domain 118 209 IPR031657 -
Sto10g2107 511 PANTHER REPLICATION FACTOR A 1, RFA1 273 425 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Sto10g2107 511 PANTHER BNAC01G35430D PROTEIN 273 425 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto10g2107 Sto-Chr10 30943851 30946207 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto10g2107 9 354 Core DNA Replication Machinery Family AT5G61000 22.656 1.14e-13 71.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto10g2107 - - vun:114187234 173.711