Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto10g2072 ATGGCTGCCGGTAGAGTTGATCCCATCAGTGCTATCAATCCAGCAAAAACAGATTGGATTATCAAGATTCACGTGGTGAGGATCTGGCTAATGCCAACATATCCATCCACATCATCCAACCATGGAATAGAGATGGTGCTATGTGACTCTGAGAATAACAAGATATCCGACTTTGTCAAGAGCGTATTCCTCAACAAATTCAAACCTATACTGAAGGAGGGAGTGGTATACATGATTTCGCAATTCTCTGTTGGGCAAAACAAGGGAAACTTTTGCGTAACCAGTCATGAGTACAAAGTGATTTTCCAATTTAGTACAAGGGTCATACCAGCGCGCGAAGATGGAAGGATTCATACTTATGGATTTGAGTGGAGATCTATCCAAAGTATAATTGCTGGAGAGGTCAATCCATCAACATTAGTCGATGTAATAGGACGGGTTTGCAACATCTCTGAGCTGCACCAATCTGTCGCGGGAGATTCCACGTCCAAGCGTATTACTAACGATGTTGAGGACCACGAGAGATCGAGAATTTCTGTAACCCTTTGGGGTAAATACGCAGATCAGATTGTGGAGTTCATGTCAACCTATACCCAAGGTCCTATTATTATTGCACTACAATGGTGTAAAATAAAGGAATACAAAGGCATAAAGACACTTTCCAATTCTATATATGCTTCTCGCATACTTATCAGCCTTGATGCTCCAAAATTTCAAGAGTTCCATGAAAATCTGCAACCAGACGACCTGATCAGTCCTGTTAATTGCAGCATTAGCAAACCTGTTAAGACAAATTCTCCAGCAGATGATGCATTCTTTGGACTAAATTGTACAACTATCAGTGAACTCTTAGTCATAGCTGATCAATCTGTTCATTGCGTTGTTGTTTCTGTTGTGAAAATTAATGCAGAGAGGGGATGCAAGTGTGAAAATACAATAAACAATCCTGTTTCACGGTTCAAAGTAGAAGTATTGGTGGTAGATGAAACCGACACAGCTTACATGACTATATTTGATCATGATACATCATCTTTCCTAGGTACAACTGCTGAAAACCTACtggCTATGAAGTTTACTAAATGGTCCCCTACACCTTCATTTACTGTTCGGCATATTTCTTATAACCTGAAATTGATTGAGAAGTATTATGTAGACTACACTGTCCCGCATGACATATCGCATCATGATGTTCGAGACGATTTCAACACTAAAGTTTtgGTTGATCTCACAGATGTGGATGACACAATATCCACACACATCCAAAGTAGTTCCAAATCCGTTAGTGTTCTAGAGGCCAGATGTCTATCATTCTTTGAGGTGGCAGCTTCTAATGATGGTGATACTCCAAGTACTTCCAAGAAGAGCTTTGACAGTGTATCAAATGGTGTGGACGACAACGATGCACATTCATCTGGATATTCAAAGAATATGATGGTGGCAAAGAGGATTAAGATTGAGAAGATTTAG 1467 0.3988 MAAGRVDPISAINPAKTDWIIKIHVVRIWLMPTYPSTSSNHGIEMVLCDSENNKISDFVKSVFLNKFKPILKEGVVYMISQFSVGQNKGNFCVTSHEYKVIFQFSTRVIPAREDGRIHTYGFEWRSIQSIIAGEVNPSTLVDVIGRVCNISELHQSVAGDSTSKRITNDVEDHERSRISVTLWGKYADQIVEFMSTYTQGPIIIALQWCKIKEYKGIKTLSNSIYASRILISLDAPKFQEFHENLQPDDLISPVNCSISKPVKTNSPADDAFFGLNCTTISELLVIADQSVHCVVVSVVKINAERGCKCENTINNPVSRFKVEVLVVDETDTAYMTIFDHDTSSFLGTTAENLLAMKFTKWSPTPSFTVRHISYNLKLIEKYYVDYTVPHDISHHDVRDDFNTKVLVDLTDVDDTISTHIQSSSKSVSVLEARCLSFFEVAASNDGDTPSTSKKSFDSVSNGVDDNDAHSSGYSKNMMVAKRIKIEKI 488
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto10g2072 488 PANTHER REPLICATION PROTEIN A 70 KDA DNA-BINDING SUBUNIT B-LIKE 8 295 - -
Sto10g2072 488 CDD RPA1_DBD_A_like 21 108 - -
Sto10g2072 488 Gene3D - 6 113 IPR012340 -
Sto10g2072 488 Gene3D - 116 249 IPR012340 -
Sto10g2072 488 Pfam Replication protein A OB domain 135 222 IPR031657 -
Sto10g2072 488 SUPERFAMILY Nucleic acid-binding proteins 7 114 IPR012340 -
Sto10g2072 488 SUPERFAMILY Nucleic acid-binding proteins 308 357 IPR012340 -
Sto10g2072 488 PANTHER REPLICATION FACTOR A 1, RFA1 8 295 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Sto10g2072 488 SUPERFAMILY Nucleic acid-binding proteins 122 246 IPR012340 -
Sto10g2072 488 CDD RPA1_DBD_B_like 142 241 - -
Sto10g2072 488 Gene3D - 296 391 IPR012340 -
Sto10g2072 488 Pfam Replication factor-A C terminal domain 306 358 IPR013955 -
Sto10g2072 488 Pfam Domain of unknown function DUF223 44 117 IPR003871 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto10g2072 Sto-Chr10 30501596 30504528 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto10g2072 2 358 Core DNA Replication Machinery Family AT5G45400 21.357 2.81e-16 80.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto10g2072 - - soe:110779942 159.458