Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto10g1925 ATGTTCTCTCATCGAGATCCTAGCATTCGGAAAAGCGGATATGCTAATGTGTTCATCAAGAACCTGGACACATCAATAGATAACAAGGCATTACATGACACTTTTGCTGCCTTTGGGAATGTACTTTCCTGTAAGGTAGCTGTTGATAGCTGTGGTCAGTCAAAAGGGTATGGTTTTGTACAATTTGACAATGATGACTCTGCTCAAAATGCCATCAAACAGTTGAATGGTATGTTGATAAATGATAAACAAGTGTATGTTGGACTCTTTGTTCGGCGCCAAGAAAGAGCTCGAGCAAATGGATCACCAAAGTTCACTAATGTGTACGTGAAAAATATCTCTGAAACGTATGCTGATGAAGACCTTAAGCAGCTCTTCGGATCATATGGTACAATAACTAGTGCAGTTGTCATGAAAGATGCAAATGGGAAGTCTCGATGTTTTGGGTTTGTTAATTTCCAAAGCCCAGATTCAGCAGCTGCTGCGGTTGAGAGGTTAAATGGAACCACTGTCAATGATGACAAGGTGTTATATGTAGGGAGAGCTCAGAGGAAAGCAGAAAGAGAGGCGGAGTTGAAAGCCAAATTTGAGCAGGAAAGAATTAGTCGATATGAGAAATTACAAGGTGCTAATCTATACTTGAAAAATCTCGATGAAAGCATCAATGATGAAAAACTGAAGGAGTTATTTTCTGAATTTGGAACAATTACATCATGCAAGGTCATGCTTGATTCACATGGGCATAGCAAGGGTTCTGGTTTCGTGGCCTTTTCTACTCCTGAGGAAGCAAGTAAAGCTTTGACTGAAATGAATGGGAAGATGATTGGTCGTAAACCTCTTTATGTTGCTGTGGCCCAGCGCAAAGAAGAGAGGAAGGCCCTGCAGGTGGTACTTCTTTAG 900 0.41 MFSHRDPSIRKSGYANVFIKNLDTSIDNKALHDTFAAFGNVLSCKVAVDSCGQSKGYGFVQFDNDDSAQNAIKQLNGMLINDKQVYVGLFVRRQERARANGSPKFTNVYVKNISETYADEDLKQLFGSYGTITSAVVMKDANGKSRCFGFVNFQSPDSAAAAVERLNGTTVNDDKVLYVGRAQRKAEREAELKAKFEQERISRYEKLQGANLYLKNLDESINDEKLKELFSEFGTITSCKVMLDSHGHSKGSGFVAFSTPEEASKALTEMNGKMIGRKPLYVAVAQRKEERKALQVVLL 299
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto10g1925 299 Gene3D - 190 295 IPR012677 -
Sto10g1925 299 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 15 92 IPR000504 GO:0003723
Sto10g1925 299 Gene3D - 91 189 IPR012677 -
Sto10g1925 299 Coils Coil 179 207 - -
Sto10g1925 299 CDD RRM2_I_PABPs 13 88 IPR045305 -
Sto10g1925 299 SMART rrm2_1 16 88 IPR003954 GO:0003676
Sto10g1925 299 SMART rrm2_1 211 283 IPR003954 GO:0003676
Sto10g1925 299 SMART rrm2_1 107 179 IPR003954 GO:0003676
Sto10g1925 299 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 212 280 IPR000504 GO:0003723
Sto10g1925 299 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 108 175 IPR000504 GO:0003723
Sto10g1925 299 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 17 85 IPR000504 GO:0003723
Sto10g1925 299 SUPERFAMILY RNA-binding domain, RBD 206 291 IPR035979 GO:0003676
Sto10g1925 299 PANTHER POLYADENYLATE-BINDING PROTEIN 1 294 - -
Sto10g1925 299 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 106 184 IPR000504 GO:0003723
Sto10g1925 299 Gene3D - 14 89 IPR012677 -
Sto10g1925 299 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 210 287 IPR000504 GO:0003723
Sto10g1925 299 CDD RRM3_I_PABPs 105 185 - -
Sto10g1925 299 CDD RRM4_I_PABPs 209 287 - -
Sto10g1925 299 PANTHER RNA BINDING PROTEIN 1 294 - -
Sto10g1925 299 SUPERFAMILY RNA-binding domain, RBD 15 186 IPR035979 GO:0003676
Sto10g1925 299 SMART rrm1_1 107 180 IPR000504 GO:0003723
Sto10g1925 299 SMART rrm1_1 211 283 IPR000504 GO:0003723
Sto10g1925 299 SMART rrm1_1 16 88 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto10g1925 Sto-Chr10 29014781 29015948 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto10g1925 1 293 Eukaryotic Initiation Factors Gene Family AT1G71770 68.475 1.64e-147 428
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto10g1925 K13126 - gmx:100783163 523.087