Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto10g1917 ATGAGAAGAAGGAGCATAGAGCTTCTTCGCTCGAATAGCCTCTATTCTTCTCTAAGCTCGCCAATCAAACTTAACCCACCGACGAAATTACCATCTCCCAATTGTGCTTCTCAAGGCTTTACTCCCATCGCCTCTTCTTTCTCCGCCTCCACCACCACCTCATCCCCTAACGGCGAAGACGAGAGGACATCGCCTTCGCCGAGGTCCCAAAGGGACTCGCTGCTTCTGGAAAAGTTTAGACTTAGGAAACTCAAAGGTACTGGGGAAGAGAAGGAAACTGAGAAGGGTTTGAAGGGTGAGGATGAACCCACTAAGGTGGTGACCCATTTTAAGGAGTTGGGTGTGGGGGAGGTGCTTGTTGAGGTTTTGGAGAAAATTGGTATTTTGGTTCCCAGTGAGATTGAATGTGTGGGGATTCCTGCGGTTTTGGAAGGGAAGAGTGTGTTGTTGAGCTCTATGTCTGGCCCTGATAGGATATTGACCTATTTGTTGCCTCTTATTCAGCTGCTAAGACAAGATGCAGAGTTGTCTCGTCCGAATTCACAGCATCCCCGGGCCCTTGTGCTGTGTGCCACAGAGGAGAAAGCTGAACAGTGCTTCAATGCTGCAAAATATCTCATCCATCATGCAGAATTGAAATCTGCAAAGGATGGCGTTTCACCAGATAATGATCAGTCAAATGTCTCAATTGGCCTCGTAATTGGACCTCCAAGTGAGATTCTTCAATACATTGAAGAGAGGACTGTTATTCCTGCTGATATAAAATATTTGGTGTTGGATGATGTAGACTGCATGCTTGATAGCGGCCTCGGCCCTGAAATTCTCAAGATCATCCGACCATTACAAGGCCATACTTCAAAATCTACTACCAAAGCATTGCAAACTGTTTTGGTCACTTCAACAATTACAGAGATTTTGGGTGAAGAGTCTCCAATTATAAAGCATCTTGAGAATAATCATGCAGGAAAAGTGTCTGCAATGATGTTAGAAATGGAATCTGCCGAAGTCTTTCATCTCACACAGTCTCAGGCTGccctaaggaaaaaacttatagaGGCCATGAATTCCCTTCTTTGA 1077 0.4448 MRRRSIELLRSNSLYSSLSSPIKLNPPTKLPSPNCASQGFTPIASSFSASTTTSSPNGEDERTSPSPRSQRDSLLLEKFRLRKLKGTGEEKETEKGLKGEDEPTKVVTHFKELGVGEVLVEVLEKIGILVPSEIECVGIPAVLEGKSVLLSSMSGPDRILTYLLPLIQLLRQDAELSRPNSQHPRALVLCATEEKAEQCFNAAKYLIHHAELKSAKDGVSPDNDQSNVSIGLVIGPPSEILQYIEERTVIPADIKYLVLDDVDCMLDSGLGPEILKIIRPLQGHTSKSTTKALQTVLVTSTITEILGEESPIIKHLENNHAGKVSAMMLEMESAEVFHLTQSQAALRKKLIEAMNSLL 358
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto10g1917 358 SMART ultradead3 127 325 IPR014001 -
Sto10g1917 358 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 50 91 358 - -
Sto10g1917 358 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 50 15 90 - -
Sto10g1917 358 SMART poly_2 298 357 IPR002004 GO:0003723
Sto10g1917 358 Pfam DEAD/DEAH box helicase 139 303 IPR011545 GO:0003676|GO:0005524
Sto10g1917 358 Pfam Poly-adenylate binding protein, unique domain 304 355 IPR002004 GO:0003723
Sto10g1917 358 MobiDBLite consensus disorder prediction 17 71 - -
Sto10g1917 358 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 139 320 IPR014001 -
Sto10g1917 358 MobiDBLite consensus disorder prediction 17 72 - -
Sto10g1917 358 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 39-LIKE 15 90 - -
Sto10g1917 358 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 39-LIKE 91 358 - -
Sto10g1917 358 Gene3D - 309 358 - -
Sto10g1917 358 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 101 305 IPR027417 -
Sto10g1917 358 Gene3D - 77 308 IPR027417 -
Sto10g1917 358 SUPERFAMILY PABC (PABP) domain 303 355 IPR036053 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto10g1917 Sto-Chr10 28920979 28924320 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto10g1917 107 281 Eukaryotic Initiation Factors Gene Family AT3G19760 24.581 1.34e-09 57.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto10g1917 - - vra:106768009 355.14