Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto10g1880 ATGCTCGATCAGGGCGATACAAAGACTACTTGTGTGCTAGTTACCTCCATTAAATTTCAGTCAAACACTTCTATGGAGTTCATCGGGTTTGCGGCGGAACACGGCGGCGgcgatgatgaagaagaagtcTACTCCGGGCAGCCGCGGTCAGGGGGAATAGCCCAAACGACGACGTCGTTTCACACAGTAATGGCGGAATCGGTGGAGCCAGCTGCAAtgatttcttcttcctcttcttcttcttcttctgagaTGAGAGCGATGGTTTCGGCGCTGACACGTGTGGTGTCGTCAGGTTCGGCGCCGCACGCACAGGGAGACACGACCACCGAATGGGTCCAAGGAATTCATGGGTTTCAGTTTCATCCTATGATGTCAGGTTTTGGACAGCTTTCTTCGATCCCTCCTAATTTGTCTGCTTCTGTTTCATCCTCGTCCCCTGTTCTTCTGCGCTCTGTCTCTGGTCAGAAAAGAGGACGTCAAGAAGAACTCCAACAACAACAGCAACCACAACTCTACGACTTCACCATACCATCACAGGGCGAGTCATCATCATCAGtGACAGAGGCGGAAGCTGTAGCGGAAGCGGGAAATATGTCGAATACTGCGGTGGTGACGACGGCTGCTGTAGGCGGCGCTGCGGTGGCGCCGCCGAGTGAAGGTGGTTCGTATGAGGAAACAGgggagaggaggaggagataCAGGGGAGTGAGGCAGAGGCCGTGGGGGAAATGGGCGGCGGAGATTCGCGATCCGCACAAGGCGGCGAGGGTGTGGCTGGGTACTTTCGACACGGCCGAGGCGGCGGCGAGGGCGTACGACGAAGCCGCATTGAGGTTCAGGGGTAACAGAGCGAAGCTGAATTTTCCGGAGAATGTTAGAGTAGTTCCGCCGCCTGTTCAGGCTTTTCCGGCGGGTCCGGCCGCCGGAAATGTCATGCCGCCGTCGTCCACGGTGGTGTCTCCGCAGTTCACGCAGGCGCCGCCGTTCGGAGGGCAGTCTGATTTGATAAGAGATTATTGGAATTACTCTCAGTTGCTACAGAGCTCCGGCGACTTCCATGGACAACGGCAGCCGCCGCCGCCGCAGCAGCTGCCGTCGAATTTGGTGCAGCAGTGGCTTTATAATTCACAATTGGGTGTTCTTCAATCGTCTTCTTCATTGTTATCACCACCATCTATGTCTTCTTCATCTCCAACTGCATTTTCACCTTCTAGTCAATTATCCTCTGCTTCCTATCCCCTGTTTTCCGATCAGCAATTGGGGTATTTCCGACCGCCGGAAAACCAGACTCACGGCGGAGCCGCCgcgagttttccggcgtcgACGTGGTCAGACTCCGGTAGCTACCCTCCACCATCTGGTTCATAA 1371 0.5171 MLDQGDTKTTCVLVTSIKFQSNTSMEFIGFAAEHGGGDDEEEVYSGQPRSGGIAQTTTSFHTVMAESVEPAAMISSSSSSSSSEMRAMVSALTRVVSSGSAPHAQGDTTTEWVQGIHGFQFHPMMSGFGQLSSIPPNLSASVSSSSPVLLRSVSGQKRGRQEELQQQQQPQLYDFTIPSQGESSSSVTEAEAVAEAGNMSNTAVVTTAAVGGAAVAPPSEGGSYEETGERRRRYRGVRQRPWGKWAAEIRDPHKAARVWLGTFDTAEAAARAYDEAALRFRGNRAKLNFPENVRVVPPPVQAFPAGPAAGNVMPPSSTVVSPQFTQAPPFGGQSDLIRDYWNYSQLLQSSGDFHGQRQPPPPQQLPSNLVQQWLYNSQLGVLQSSSSLLSPPSMSSSSPTAFSPSSQLSSASYPLFSDQQLGYFRPPENQTHGGAAASFPASTWSDSGSYPPPSGS 456
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto10g1880 456 MobiDBLite consensus disorder prediction 386 417 - -
Sto10g1880 456 Gene3D AP2/ERF domain 232 292 IPR036955 GO:0003700|GO:0006355
Sto10g1880 456 Pfam AP2 domain 233 282 IPR001471 GO:0003700|GO:0006355
Sto10g1880 456 MobiDBLite consensus disorder prediction 386 456 - -
Sto10g1880 456 ProSiteProfiles AP2/ERF domain profile. 233 290 IPR001471 GO:0003700|GO:0006355
Sto10g1880 456 CDD AP2 241 292 IPR001471 GO:0003700|GO:0006355
Sto10g1880 456 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF110 80 416 - -
Sto10g1880 456 PANTHER DNA-BINDING DOMAIN 80 416 IPR044808 GO:0003700|GO:0009873
Sto10g1880 456 PRINTS Ethylene responsive element binding protein signature 234 245 IPR001471 GO:0003700|GO:0006355
Sto10g1880 456 PRINTS Ethylene responsive element binding protein signature 256 272 IPR001471 GO:0003700|GO:0006355
Sto10g1880 456 MobiDBLite consensus disorder prediction 435 456 - -
Sto10g1880 456 MobiDBLite consensus disorder prediction 159 191 - -
Sto10g1880 456 SUPERFAMILY DNA-binding domain 233 291 IPR016177 GO:0003677
Sto10g1880 456 SMART rav1_2 233 296 IPR001471 GO:0003700|GO:0006355
Sto10g1880 456 MobiDBLite consensus disorder prediction 213 232 - -
Sto10g1880 456 MobiDBLite consensus disorder prediction 151 193 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto10g1880 Sto-Chr10 28454513 28456515 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto10g1880 225 351 AP2-EREBP Transcription Factor Family AT5G50080 62.205 4.43e-36 131
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Sto10g1880 AP2 9.3e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto10g1880 - - vun:114180418 244.588
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto10g1880 10 28454513 28456515 Sto10g1880 10 28454513 28456515 ECH