Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto10g1827 ATGGTTAAAACAAAGAAATACAATGAACGGAAGTCTTGTTCACTTTTATTGCATGTGAAGCAGAAGGAGGAAGATATTGCTATATGTGAATGCAAATATAATGTTAGTGACCTTGACAGTGCATGTGGAGATAGGTGTCTCAACGTATTAACCAGCTCTGAATGCACCCCTGGCTATTGCCCTTGTGGCGTGTTTTGCAAAAATCAGAGATTTCGAAAGTGTGAATATGCAAAAACAAAGTTGTTTAAAACTGAAGGCCGTGGATGGGGCCTTTTGGCTGATGAGAACATTAAGGCTGGACAGTTTATTATTGAATATTGTGGAGAAGTAATTTCTTGGAAAGAAGCCAAGCGCAGATCCCAGGCTTATGAAACTCAAGGTCTGAAGGATGCATTTATTATTTGTCTTAATGCCGCTGAATCTATTGATGCAACTAGAAAGGGAAGCCTTGGTAGATTTATAAATCATTCCTGGTTTGAGATCAACTTAACCTGTCAAGTTTGCAGTCAGCCAAATTGTGAGACAAGGAAATGGAATGTCTTGGGGGAGATAAGAGTTGGGATATTTGCTAAACAAGATATTCCTTTTGGAGCTGAATTGGCATatgattataattttgaatGGTTTGGTGGTGCAAAGGTCCGTTGCCTCTGTGGTGCAGCCAAATGTTCTGGATTCCTTGGAGCAAAATCTCGTGGTTTTCAGCACCAGCAAAACAGACCCATTAGCTGGAAATGTAGAGACTCCGAAACAAAAACAGAGACGCAGCCAGAAACCATTCACAGAATCAGAAGATGCGGAAACAAGAAAAAAACCAGCAGACACAAACGCACCGCAGAATTAGAGACGCAGCAGCACAAACCAGAACCAGACCCAAAAGAAACCGGCCACCGCAGCACCAACACAGACCCCCCACAACAAACTGGTTGA 930 0.4172 MVKTKKYNERKSCSLLLHVKQKEEDIAICECKYNVSDLDSACGDRCLNVLTSSECTPGYCPCGVFCKNQRFRKCEYAKTKLFKTEGRGWGLLADENIKAGQFIIEYCGEVISWKEAKRRSQAYETQGLKDAFIICLNAAESIDATRKGSLGRFINHSWFEINLTCQVCSQPNCETRKWNVLGEIRVGIFAKQDIPFGAELAYDYNFEWFGGAKVRCLCGAAKCSGFLGAKSRGFQHQQNRPISWKCRDSETKTETQPETIHRIRRCGNKKKTSRHKRTAELETQQHKPEPDPKETGHRSTNTDPPQQTG 309
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto10g1827 309 ProSiteProfiles Post-SET domain profile. 212 228 IPR003616 -
Sto10g1827 309 MobiDBLite consensus disorder prediction 264 309 - -
Sto10g1827 309 Pfam SET domain 88 205 IPR001214 GO:0005515
Sto10g1827 309 ProSiteProfiles SET domain profile. 77 205 IPR001214 GO:0005515
Sto10g1827 309 SMART set_7 77 211 IPR001214 GO:0005515
Sto10g1827 309 SMART shorttest3 24 76 IPR006560 GO:0005634|GO:0018024
Sto10g1827 309 SMART PostSET_3 212 228 IPR003616 -
Sto10g1827 309 PANTHER SET DOMAIN PROTEINS 20 289 - -
Sto10g1827 309 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE 20 289 - -
Sto10g1827 309 Pfam AWS domain 37 74 IPR006560 GO:0005634|GO:0018024
Sto10g1827 309 SUPERFAMILY SET domain 24 225 IPR046341 -
Sto10g1827 309 MobiDBLite consensus disorder prediction 275 298 - -
Sto10g1827 309 ProSiteProfiles AWS domain profile. 24 75 IPR006560 GO:0005634|GO:0018024
Sto10g1827 309 Gene3D SET domain 1 245 IPR046341 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto10g1827 Sto-Chr10 27988727 27991792 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto10g1827 59 227 C2H2 Transcription Factor Family AT2G23740 32.105 5.22e-17 80.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Sto10g1827 SET 1.1e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto10g1827 - - lang:109335575 402.905
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto10g1827 10 27988727 27991792 Sto10g1827 10 27988727 27991792 ECH