Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto10g1819 ATGGGTTGTGTTCAGGCTAAGCCATCGGAGGGTTCGGAAGCTAGGGGATTAGAGAGGTTGAAATTGGAGAATGGGTATGTTGGAGGCGAGAGTTTCGTCGCTCATCGACGATCGATGGGTCAACGATATGAAGACAGAAAGATTGGAAGGTTAAACCAGCGAGAGCCCAGAAAGCGGGTTGACTCTGGTACTGAGAACGACCAAACCCAAGGTAGCAGCAATGGCGGTGACGGTGTAAGAAGAGGTGGGGATGAGGAGAAATTGAGTAGAGAGGAGAAGAGAAATGCTGTGCATGATAGTGAGAAATTGACAGGGAAATGTTTCGACGATGAGATGGTTGATGGGTGGCCCAGATGGTTAGTTGATAATGTTCCTAGAGAAGTATTGGCAGGCTTGATTCCCAAGAGTGCTGAATCATACAAAATGATTGATAAGGTAGGACAGGGAACCTATAGCAATGTTTATAAAGCACGAGATCGGGACACTGGAGAAATTGTGGCCCTCAAGAAGGTCCGCTTTGATACATCCCATCCTGAAAGCATTAAATTTATGGCAAGAGAAATTACAATATTACAGAGATTGGATCATCCCAATGTCATAAAACTCAAAGGATTGGCTACTTCGAGGATGCAATACAGTCTTTATCTTGTTTTTGATTTCATGCAATCAGACATGGCTAGAATTATTTCCCGTCCTGAAGAAAGACTCACTGAACCACAGgtCAAGTGCTATATGTATCAGCTGCTTTCGGGTCTGCAGCATTGCCATGATAAGGGGATTTTGCATCGAGATATTAAGGGGTCAAACCTTTTGATTGATAAAAATGGGATGCTTAAGATTGGAGATTTTGGGCTTGCCAATTTTTATAGTCCAGACCATAATCGTCCTCTCACAAGCAGGGTTGTGACACTATGGTACAGAGCTCCTGAGCTGTTGTTAGGTGCCACAGATTATGGAGTTGGTATTGATCTATGGAGTGCTGGATGTCTACTGGCAGAAATGTTTACAGGAATTCCAATTATGCCTGGTAGAACAGAGGTTGAGCAGCTTCATAGGATTTTCAGgctatgtggcacaccatcagAAGAGTACTGGAAAAAATTGAAACTTACTACAACATTTAGACCTCCAAAGTCTTACAGACCCAGCCTTGTAGAATCTTTTAGGGTTCTCCCTCCATCTTCTTTGGGCCTTTTATGTACTCTGCTCGCTTTAGATCCTGCATATCGTGGCACTGCATCTAAAGCTCTTCAAAATCAGTTTTTCTTTACAAGTCCATTGGCATGTGACCTGTCTGGTCTGCCTGCTATATGCAGAGAAGATGATGAGCAAAATCTAGATGATGAACAGATCAAGCATGTTCCATTATCATTTCTTTCCAGAGCTTTGCTGATCACTGATTCCATTGAAGCATTGTTCATGAACTCTAAGATTAGACGATCTCGTACGCATCAAGAGCGTAGAAGGAAGAATCTTGCATCTGGCAGGCCTATAGAGCATACTGTATCTTCTAAGGAGGAATTGACCAGGAATGTTGAGGCTTTTGTACCTAATGAAGAACACACTGTGGAGGCAGAGGATCGTCACTCTCCTTTGTTTCCTTCTTCTCCATATGTGGCTTCAGACGATCAAAAGCTTTCCCCCAAAATCCATGGCCATGGTAATAATGGTGGTGAAAACTTGAAGAACCTGCCTCCATTACCAAAGTTAAAGAAAGTACAAGCAGTTGGAAAAGATGACAACAACTATAGATCTCACAATGTCCTGAGGTCTTCTTCCTCCAGAGAATTTAGAAACCCAAAACAGGGGCAGCATTTACTCATTGAAATTGATGATTAG 1839 0.422 MGCVQAKPSEGSEARGLERLKLENGYVGGESFVAHRRSMGQRYEDRKIGRLNQREPRKRVDSGTENDQTQGSSNGGDGVRRGGDEEKLSREEKRNAVHDSEKLTGKCFDDEMVDGWPRWLVDNVPREVLAGLIPKSAESYKMIDKVGQGTYSNVYKARDRDTGEIVALKKVRFDTSHPESIKFMAREITILQRLDHPNVIKLKGLATSRMQYSLYLVFDFMQSDMARIISRPEERLTEPQVKCYMYQLLSGLQHCHDKGILHRDIKGSNLLIDKNGMLKIGDFGLANFYSPDHNRPLTSRVVTLWYRAPELLLGATDYGVGIDLWSAGCLLAEMFTGIPIMPGRTEVEQLHRIFRLCGTPSEEYWKKLKLTTTFRPPKSYRPSLVESFRVLPPSSLGLLCTLLALDPAYRGTASKALQNQFFFTSPLACDLSGLPAICREDDEQNLDDEQIKHVPLSFLSRALLITDSIEALFMNSKIRRSRTHQERRRKNLASGRPIEHTVSSKEELTRNVEAFVPNEEHTVEAEDRHSPLFPSSPYVASDDQKLSPKIHGHGNNGGENLKNLPPLPKLKKVQAVGKDDNNYRSHNVLRSSSSREFRNPKQGQHLLIEIDD 612
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto10g1819 612 PANTHER CYCLIN-DEPENDENT KINASE 1 529 - -
Sto10g1819 612 MobiDBLite consensus disorder prediction 79 99 - -
Sto10g1819 612 SMART serkin_6 140 422 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sto10g1819 612 ProSitePatterns Protein kinases ATP-binding region signature. 146 169 IPR017441 GO:0005524
Sto10g1819 612 ProSiteProfiles Protein kinase domain profile. 140 422 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sto10g1819 612 CDD STKc_CDK9_like 140 422 - -
Sto10g1819 612 Pfam Protein kinase domain 140 422 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sto10g1819 612 MobiDBLite consensus disorder prediction 28 99 - -
Sto10g1819 612 Gene3D Phosphorylase Kinase; domain 1 131 222 - -
Sto10g1819 612 SUPERFAMILY Protein kinase-like (PK-like) 135 426 IPR011009 -
Sto10g1819 612 MobiDBLite consensus disorder prediction 480 568 - -
Sto10g1819 612 ProSitePatterns Serine/Threonine protein kinases active-site signature. 260 272 IPR008271 GO:0004672|GO:0006468
Sto10g1819 612 MobiDBLite consensus disorder prediction 37 64 - -
Sto10g1819 612 MobiDBLite consensus disorder prediction 488 528 - -
Sto10g1819 612 Gene3D Transferase(Phosphotransferase) domain 1 223 446 - -
Sto10g1819 612 PANTHER CELL DIVISION PROTEIN KINASE 1 529 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto10g1819 Sto-Chr10 27931502 27938323 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto10g1819 135 436 Core Cell Cycle Gene Families AT5G10270 47.188 7.51e-95 298
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-CRK7-CDK9 Sto10g1819 Pkinase 1.3e-68 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto10g1819 K08819 - gmx:100776854 759.985
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto10g1819 10 27931502 27938323 Sto10g1819 10 27931502 27938323 ECH