Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto10g1797 atgtTTGAAGGAAGCAATAATCTTATTAGTTCTATCACACCTTTTCGAGAAGAGCTTTGTGTCAAGGCACGTGTAGTTCGTTTATGGACAAAAGTTCAGAGATCTTCTGATGATGTTCCTATTCAATATTTTGGTTTCGATTTTGTTAACCTTCGTTCCATTAGATGTGGTGTAGTTGATTCCACCATTCTTATTgATGTGATAGGCCTTGTCCGCAACATTTCCAACATTCGTCGTAAGTTCTCTGAAAATTTCCAGAAAAATCGTATACCTATTCAAATCTACGATGCATGTGGTAATGTGCTGCAAGTTGTTTTGTGCGGCATCCATTGTGAGAATTTTAGATCCTTTATCCGTAATTTTAGTGGAGGTAGGATTATCGTTGCTGTTCAGCGGTGCAAAGTAGCTGATTTTCATGGTTCAAAATATCTGATTACTTCGATGGAAGCCACACGTCTACTGATTAACCAGGACATCACCCGTTTTGATAATCTTCCTGTAGAATTTAAACAATTGGAtctgaaacaaaataatttccgAAACATTCATTTGTCACATGTGTCTTCTGAACTTTCGAAAGAAACTTTCGCGGATATTCAATTGAATACCATAAGTGACTTATATATATCATCCGAATATGTTGTGCACTTCATAATTGCAACTATTATTAAGGTTAATACATCaatggattggtattattatgcTTGTGAGTTCTGCATAGAGGAGTTGAATCTTGATGATGATTGCTATTATTGTTACTCATGTGGCAAATCAAGTTCTACACCTACAATTAGGTATAAAATTAATGTCGATGTTGTTGACTACACTGGTTGGgcaagattaattattttaaatcctgATGCGTCAAACTTTCTCATGACTGATGCTTCAAAACTCCTTCGCCGAGAGcTTATTGACGACCCACTTAAACACACAAATGTTCTAGGAAATTTAGTTGATAAGGTGTTTCTGTTTAAAATATTCGTGAATGAAGCTTCCTGCGTTCCAACTCCATCATTTGAAGTTATAACAATGTCTTGGGATGCATCCTTGATTGAGAAGTTATCAGACAAGAACCCAAATTTCTTCCGGATTCATACTGATGTAGGTCATGATCGATTGAATTCTTCCTTCTTGCTTGGTTCACGGTTTGTATCTGCAGAAGAAGCATATGACAGACTGATAACTGTATCTTCAAACGCTGACGGTGAAGAGTTATTGAATGTTCTTCGTCTCCATCCTCTTATGGATCAGAATATCTCCATGGATCTACTTGGCACTTACAATGGTCTTATTTTTCTAAAAGTGACCAATGATGATGAAACCATGAGGTTGTTCATTTGCAATCCTGCTACTAAACGTGTTCGTCAAATTCAAGACTTCGTTCTCCCAATGCCTACTGGTCGTGTTAAGTATGATTTCGGTTTCAATGCTTTGTTCTCATCAATGTATATTCTGGTAATATATGAGGAAAGTAATAATGAGAATCAACTTAGGGTCATGCTTTATAGTTGTCTTACCCATACTTGGACTAACATTAATCCTCCTGATTTTCATACAAATATATGGGAGTCCAAGTCTGTCTGCATAAATGGTATTATGTACTGGCTTTCTTATCCTCCAATTGAAGCCGTTGAGCAATTGCCCACTATCCTTCGTTTTGATTTTGCTGACCATATCTTCAGTACTATATCTGGTCCTTCTAATAGACCCGTATTTTCATATATACCTGTGGAGTTCGAAGGTTCTTTAGCAATTATTTGTGGTGAGCTACAGGGGACTGAGATAGTCAGATACATCACTATGCAGCTCATGTATGATGCCAAGTCTCAACAATACTGGTGGCCCGTACTATCTTGGCCATATGTCAATGTCAACACACGGTTGGTAGTTTCATATCGCAAAAGCACTGGAAAATCATTTATTTCCATGGATTCCATAAACTTAACTATTAAGACCAAGCAACCATTGACGCCGAGTTTAAAAATGCCATCAACCAAGAGATCTAGAGGCCATGAAGCTGAAAATGAAGGTTTAACAATTATGTTGGAGTTAGAATTTGTTTACAAATAA 2073 0.3589 MFEGSNNLISSITPFREELCVKARVVRLWTKVQRSSDDVPIQYFGFDFVNLRSIRCGVVDSTILIDVIGLVRNISNIRRKFSENFQKNRIPIQIYDACGNVLQVVLCGIHCENFRSFIRNFSGGRIIVAVQRCKVADFHGSKYLITSMEATRLLINQDITRFDNLPVEFKQLDLKQNNFRNIHLSHVSSELSKETFADIQLNTISDLYISSEYVVHFIIATIIKVNTSMDWYYYACEFCIEELNLDDDCYYCYSCGKSSSTPTIRYKINVDVVDYTGWARLIILNPDASNFLMTDASKLLRRELIDDPLKHTNVLGNLVDKVFLFKIFVNEASCVPTPSFEVITMSWDASLIEKLSDKNPNFFRIHTDVGHDRLNSSFLLGSRFVSAEEAYDRLITVSSNADGEELLNVLRLHPLMDQNISMDLLGTYNGLIFLKVTNDDETMRLFICNPATKRVRQIQDFVLPMPTGRVKYDFGFNALFSSMYILVIYEESNNENQLRVMLYSCLTHTWTNINPPDFHTNIWESKSVCINGIMYWLSYPPIEAVEQLPTILRFDFADHIFSTISGPSNRPVFSYIPVEFEGSLAIICGELQGTEIVRYITMQLMYDAKSQQYWWPVLSWPYVNVNTRLVVSYRKSTGKSFISMDSINLTIKTKQPLTPSLKMPSTKRSRGHEAENEGLTIMLELEFVYK 690
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto10g1797 690 Gene3D - 183 350 IPR012340 -
Sto10g1797 690 Gene3D - 40 178 IPR012340 -
Sto10g1797 690 PANTHER OS09G0372900 PROTEIN-RELATED 352 615 - -
Sto10g1797 690 CDD RPA1_DBD_B_like 66 160 - -
Sto10g1797 690 Pfam F-box associated domain 528 623 IPR013187 -
Sto10g1797 690 PANTHER F-BOX PROTEIN 352 615 - -
Sto10g1797 690 Pfam Replication factor-A C terminal domain 219 331 IPR013955 -
Sto10g1797 690 SUPERFAMILY Kelch motif 435 621 IPR015915 GO:0005515
Sto10g1797 690 SUPERFAMILY Nucleic acid-binding proteins 202 331 IPR012340 -
Sto10g1797 690 Pfam Replication protein A OB domain 61 144 IPR031657 -
Sto10g1797 690 TIGRFAM F_box_assoc_1: F-box protein interaction domain 428 624 IPR017451 -
Sto10g1797 690 SUPERFAMILY Nucleic acid-binding proteins 46 165 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto10g1797 Sto-Chr10 27687935 27697052 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto10g1797 46 299 Core DNA Replication Machinery Family AT5G08020 23.827 4.27e-07 51.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto10g1797 - K07466 soe:110779942 100.908