Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto10g1328 ATGGCTGTTTATAATCCTTCAGTGGTTCTCTGCTCATTTACCGATCCAGGACATCCATCTCTAGGGTTCTATCTTAAGGACCGTGAATTTGATTCAAAAGAAACATTAACCCCTCTTCCACCACTACCTACAGATGTTGTTGATCGTTTTGCAAATTTTACTGGGGCAGTCAATGGCATCCTCTGCGTAGATTTTGCAACACCCGCTGCTAAAGAAATATATTCACTATGCAACATTACAAATTCATCTTTTCTTATGGTTTCATCTATTCAACTTACATCAGATGAtgGTAAAGTCTTATCAGCGTTTGGTGCCAACTCTTCTACTGAAAGGACATGGGTCAGTTATGATGTTTCCATCAACATGGTTGGTGATCAATTTTTCTTGGGTGAAGTAGATGGACTTGTGGGTATCATTACTTGGACTTCTGGCAGTTTGGAGATTACTAGGCATTATAATCTCTTTGTGAAGCGCAACTCATCTAATGGGACAGCAATATTCCGTTGGGTCAAAGGCGTTAAAGATGTTCCAACTTTCCTGAATTTCCTTACTTATAGGAATAATAAGTTTGTCTTTCATTGTGACAATCATTTTCAGGTTGATGTGAACAAAGGCGTTTGTTACAAGGACGTCTTCAGCTTCCCAGGAGGTGAACTATGTCACATGGTGAAGATAGCTGTCCACAAGCCACATAATTCTATCACACCTTTTCGAGAAGATCTTCGTGTTAAGGCACGTGTAGTGCGTTTATGGTCAGTACCCAAAAATTGCTCCAATAATTCTCCTCCATCCAACCGCTTAGAGATGATTTTGTGTGACTCCCAGAACAATAAGATATGTGCATCTATTAATGCCATCTTCGAAAGGAGATTCAAGAGGCTATTTAACGAGGGAGAAGTCATAATTCTGTCATTAGTTGCCGTTGCACATAACAATGGGACATTTCGTATGACAAATCACCAGTACAGAATCATTTTTCAATATAGGACCAAAGTTCATAAATCTTCTGATGATGTTCCTATTCAATATTTTGGTTTCGATTTTGTTAACCTTCGTTCCATTAGATGTGGTGTAGTTGATTCCACCCTTCTTATTGGTCTGGTCCGCAACACTTCCAACATTCGTCGTAAGTTCTTTGACAATTTCCAGACAAATCGTATACCTATTGAAATCTACGATGCATGTGGTAATGTGCTGCAAGTTGTTTTTTGCGGCATCCATTGTCAGATATTTAGAACATTTATTCGTAATTTTAGTGGAGGTAGGATTATCGTTGCTATTCAGTGGTGCAAAGTAGCTGATTTTCATGGTTCAAAATATGTGACTACTTCTATTGAAGCCACACGTCTATTGATTAACGAGGACATCACTCATTTTGATGATCTTCCTGTAGAATTTCAACAATTGGAGCTGAAACCAGATAATTTCCGAAACATTCATTTGGCACGCGTTTCTTTTGAACTTTCAAAAGAACCTTTCGTTGATTTTCAATTGAATACCATAagtgaattatatatatcatccgAATATTCTGTGCACTTCATACTTGCAACTGTTATTAAGGTTAATACATCAAcggattggtattattatgcTTGTGACTTCTGCATGGAGGAGTTGGATCTTGAGGACGATTTCTATCATTGCTACTCAAGTGGCAAATCAATTTCTTCACCTTCAATTAGGTATAAAATTAATGTTGAAGTTGTTGACACCACTGGTTGGgcaagattaattattttagatccTGATGCGTCAAACTTTCTCATGACTGATGCTTCAAAACTCCTTTGCCGAGAGCTTACTGATGACCCACTTAAACACACAAATGTGCTAGAAAATTTAGTCCATAAGGTGTTTCTGTTTAAAATATTCGTGAATGAACCTTCCTGCGTTCCAACACCATCATTTGAAGTTATAACTATGTCTTGGGATGCATCCTTGATTGAGAAGTTGTCAGACAAGGTTATACCATTGTCAGATATTGAAAGTGATGACAAATCACAGAATGAGAGCTCTCCCACATCTCCCGTATTCACCTCTGCTAATCATCTTACTAGACCACAAAACGATTGGGCAACATAA 2085 0.3703 MAVYNPSVVLCSFTDPGHPSLGFYLKDREFDSKETLTPLPPLPTDVVDRFANFTGAVNGILCVDFATPAAKEIYSLCNITNSSFLMVSSIQLTSDDGKVLSAFGANSSTERTWVSYDVSINMVGDQFFLGEVDGLVGIITWTSGSLEITRHYNLFVKRNSSNGTAIFRWVKGVKDVPTFLNFLTYRNNKFVFHCDNHFQVDVNKGVCYKDVFSFPGGELCHMVKIAVHKPHNSITPFREDLRVKARVVRLWSVPKNCSNNSPPSNRLEMILCDSQNNKICASINAIFERRFKRLFNEGEVIILSLVAVAHNNGTFRMTNHQYRIIFQYRTKVHKSSDDVPIQYFGFDFVNLRSIRCGVVDSTLLIGLVRNTSNIRRKFFDNFQTNRIPIEIYDACGNVLQVVFCGIHCQIFRTFIRNFSGGRIIVAIQWCKVADFHGSKYVTTSIEATRLLINEDITHFDDLPVEFQQLELKPDNFRNIHLARVSFELSKEPFVDFQLNTISELYISSEYSVHFILATVIKVNTSTDWYYYACDFCMEELDLEDDFYHCYSSGKSISSPSIRYKINVEVVDTTGWARLIILDPDASNFLMTDASKLLCRELTDDPLKHTNVLENLVHKVFLFKIFVNEPSCVPTPSFEVITMSWDASLIEKLSDKVIPLSDIESDDKSQNESSPTSPVFTSANHLTRPQNDWAT 694
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto10g1328 694 Gene3D - 485 646 IPR012340 -
Sto10g1328 694 PANTHER REPLICATION FACTOR A 1, RFA1 221 462 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Sto10g1328 694 MobiDBLite consensus disorder prediction 663 694 - -
Sto10g1328 694 Gene3D - 230 338 IPR012340 -
Sto10g1328 694 CDD RPA1_DBD_A_like 242 332 - -
Sto10g1328 694 PANTHER REPLICATION PROTEIN A 70 KDA DNA-BINDING SUBUNIT A 221 462 - -
Sto10g1328 694 SUPERFAMILY Nucleic acid-binding proteins 233 339 IPR012340 -
Sto10g1328 694 Pfam Domain of unknown function DUF223 268 344 IPR003871 -
Sto10g1328 694 Pfam Replication factor-A C terminal domain 517 628 IPR013955 -
Sto10g1328 694 SUPERFAMILY Nucleic acid-binding proteins 499 628 IPR012340 -
Sto10g1328 694 MobiDBLite consensus disorder prediction 669 694 - -
Sto10g1328 694 CDD RPA1_DBD_B_like 364 457 - -
Sto10g1328 694 Gene3D - 340 471 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto10g1328 Sto-Chr10 13583164 13590406 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto10g1328 227 596 Core DNA Replication Machinery Family AT5G08020 22.222 2.66e-07 52.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto10g1328 - - bvg:104885244 144.821