Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto10g1160 ATGGATCCCAAATTATGCACGAATGGTTGTGGTTTTTACGGTTCCTCTGAAACCTACAATCTTTGCTCAAAATGTTACAAATATCACGTTCTTACACTCGCAAAATCATCGGTAGAGGATATTACTGAATTAACTTCATCACTATCACTAACTGATGATCAAGATACAGCCGCTAGTAAAACTAGTGAAATCAAGAACTCTGAGACTGCTCAACaatcggagaagaagaagagtaataGGTGCAAGAGTTGCAATAAAAAGGTGGGGCTTACAGGTTCCAGTGTCGATGTGGGGACTTGTTTTGTGGAAAACATAGATACCCAGAAGAGCATTCTTGCACTATCTGAGGCTCTCGCTCCATCAAGCTCAAGACACGATTCTGCTTCATCAAGCTCAGGCACACCACAATCCTCATCAGCAGCGGCAACCGCAGCAGAACGAGCACGAACATTTATTCTCTGCTACTGTCGCCGCCATTTTTCACATGTAACTTTCTCTATCACCGCAGTCCAAGCTCCCTCAAATACTCCAATTCTAATTTTACAAGGAATGCGCTGTACTTCCAAACTAGTGATTTATGAGgtCTCTGAGAAGAAAGCAAAAGACCGGTGTGCTTCAAAAGGAAATATTCCTTACTTTGAGACATCAGCAAAAGAGGATTACAATGTGGATGCAGCATTTTTGTGTATTGTTAAGACTACTCTAGCCAATGAGCATGAACAGGACATGAGCCTTATAAGGAATCGCCTCAATGGTTCAATTCTTACAGAATTTGGTGATATTGTTAGTTTTGTGAACCTACTTCTTTCTGCAAATAATTTTACAGGAACAGTACCAGAATTATTTGTCAATCTAAAGAACCTAACTGATTTTACTGACATggaaggaaatgaaaatattttgcTTGGACCAAGATGCTACTTCCCCAAGTAA 933 0.3837 MDPKLCTNGCGFYGSSETYNLCSKCYKYHVLTLAKSSVEDITELTSSLSLTDDQDTAASKTSEIKNSETAQQSEKKKSNRCKSCNKKVGLTGSSVDVGTCFVENIDTQKSILALSEALAPSSSRHDSASSSSGTPQSSSAAATAAERARTFILCYCRRHFSHVTFSITAVQAPSNTPILILQGMRCTSKLVIYEVSEKKAKDRCASKGNIPYFETSAKEDYNVDAAFLCIVKTTLANEHEQDMSLIRNRLNGSILTEFGDIVSFVNLLLSANNFTGTVPELFVNLKNLTDFTDMEGNENILLGPRCYFPK 310
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto10g1160 310 SUPERFAMILY AN1-like Zinc finger 60 101 IPR035896 -
Sto10g1160 310 SMART A20_3 3 27 IPR002653 GO:0003677|GO:0008270
Sto10g1160 310 Gene3D - 131 234 IPR027417 -
Sto10g1160 310 Pfam A20-like zinc finger 5 27 IPR002653 GO:0003677|GO:0008270
Sto10g1160 310 Pfam Ras family 145 234 IPR001806 GO:0003924|GO:0005525
Sto10g1160 310 Gene3D - 1 83 - -
Sto10g1160 310 ProSiteProfiles small GTPase Rab1 family profile. 38 306 - -
Sto10g1160 310 PANTHER RAB FAMILY 195 244 - -
Sto10g1160 310 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 5 49 - -
Sto10g1160 310 ProSiteProfiles Zinc finger A20-type profile. 1 34 IPR002653 GO:0003677|GO:0008270
Sto10g1160 310 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 174 247 IPR027417 -
Sto10g1160 310 Gene3D Ribonuclease Inhibitor 235 300 IPR032675 -
Sto10g1160 310 SUPERFAMILY L domain-like 244 290 - -
Sto10g1160 310 PANTHER OS05G0536900 PROTEIN 195 244 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto10g1160 Sto-Chr10 11325994 11330901 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto10g1160 4 101 C2H2 Transcription Factor Family AT3G52800 33.898 3.25e-08 50.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto10g1160 K07897 - fve:101304342 95.1301