Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Sto10g1149 | ATGGATCCCAAATTATGTGCGAATGGTTGTGGCTTTTACGGTTCCTCTGAAACCTACAATCTTTGCTCAAAATGTTACAAAGATCACATTCTTACACTCGCAAAATCATCGGTAAAGGATATCACTGAATTAACTTCATCACTATCACTAAATGATGATCAAGATTCGGCCGCAAGTAAAACTAGTGAAATCAAGAACTCTGAGACTGCTCAACaatcggagaagaagaagagtaataGGTACCCAGAAGAGCATTCTTGCACTGTAAATTTCAAGCAGATTGGTCGTGAAATTttgatcaaacaaaatcctgTCATAAAGGCTGATAAGTTAGATAAGATATTGtag | 348 | 0.3247 | MDPKLCANGCGFYGSSETYNLCSKCYKDHILTLAKSSVKDITELTSSLSLNDDQDSAASKTSEIKNSETAQQSEKKKSNRYPEEHSCTVNFKQIGREILIKQNPVIKADKLDKIL | 115 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Sto10g1149 | 115 | SUPERFAMILY | Glucocorticoid receptor-like (DNA-binding domain) | 5 | 51 | - | - | |
| Sto10g1149 | 115 | PANTHER | ZINC FINGER A20 AND AN1 DOMAIN-CONTAINING STRESS-ASSOCIATED PROTEIN 4 | 78 | 114 | - | - | |
| Sto10g1149 | 115 | PANTHER | ZINC FINGER A20 AND AN1 DOMAIN-CONTAINING STRESS-ASSOCIATED PROTEIN 4 | 3 | 74 | - | - | |
| Sto10g1149 | 115 | SUPERFAMILY | AN1-like Zinc finger | 79 | 109 | IPR035896 | - | |
| Sto10g1149 | 115 | Pfam | A20-like zinc finger | 5 | 27 | IPR002653 | GO:0003677|GO:0008270 | |
| Sto10g1149 | 115 | MobiDBLite | consensus disorder prediction | 69 | 83 | - | - | |
| Sto10g1149 | 115 | PANTHER | AN1-TYPE ZINC FINGER PROTEIN | 78 | 114 | - | - | |
| Sto10g1149 | 115 | PANTHER | AN1-TYPE ZINC FINGER PROTEIN | 3 | 74 | - | - | |
| Sto10g1149 | 115 | MobiDBLite | consensus disorder prediction | 51 | 68 | - | - | |
| Sto10g1149 | 115 | MobiDBLite | consensus disorder prediction | 51 | 84 | - | - | |
| Sto10g1149 | 115 | Gene3D | - | 82 | 110 | IPR035896 | - | |
| Sto10g1149 | 115 | ProSiteProfiles | Zinc finger A20-type profile. | 1 | 34 | IPR002653 | GO:0003677|GO:0008270 | |
| Sto10g1149 | 115 | SMART | A20_3 | 3 | 27 | IPR002653 | GO:0003677|GO:0008270 | |
| Sto10g1149 | 115 | Gene3D | - | 1 | 81 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Sto10g1149 | Sto-Chr10 | 11206252 | 11206681 | Tandem |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Sto10g1149 | 4 | 114 | C2H2 Transcription Factor Family | AT3G52800 | 31.210 | 1.19e-13 | 62.0 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Sto10g1149 | - | - | tcc:18611436 | 98.9821 |