Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto10g1130 ATGATTGAACAAGACGAGACCGATTTCGGTGGCTTCTTCGACCATATCGACGACCTCCTTGATTTCCCCGCCGATGACGTGGACGTCGGCGCTGCTTCCTTCCCGGCCGCCACGATGACCTGCCCGAGTATTTGGCCCGCCGTGTCGGACCCAGTTTTCTCCGGGAACAGCTCGCCGGAGCTCTCCATGCCGTATGAAGACATTGTCCAGTTAGAATGGCTACCAAACTTTGTGGACTATGATCCCTCTTGTGGGAGCCTCACCCTTGAGAAAGTGGAACAGAAACAGAACCAATTCCAGACATTCAGCCCTGTCTCGGTCCTCGAAAGAGGCGGCGGCGGTGGcggctcctcctcctcctcctccggcGAGAAGAATGCACCTTGCAGCCCGGAAATTTACATCCCGGTACCGTCTTGTGTACGCGGCGCTCGCAGCAAGCGCCCCCGCCCGGCCACCTTCAACCCTCGTTCGGCCATGCAGTGCTTCATCTCCCCGGCCGCTTTGTCCGTCGGCGAGAACACTATTATTATGACATTGCCTAATAATGCCATTTCCAAGACCTCTTCGGATTCTGATCAGAATTTCGCCGAGTCTCGTCCGTtgatcaagaagaagaagaagaaagctaGGTCATCACATCATAATATTGTGGCATCACAAGAAGTTAGGAAATGCATGCATTGTGAGATAACCAAGACTCCACAATGGAGGGCAGGGCCATTTGGGCCAAAATCCCTTTGCAACGCCTGCGGTGTCCGGTACAAGTCCGGCCGGCTCTTCCCGGAGTACCGCCCGGCCGCAAGTCCAACGTTTTGCCCATCCTTGCACTCCAATTCGCACCAGAAGGTTCTCGAGATGCGAAGCAAGTCCGGCGAAGtaaccgccgccgccgccgccgcttcTATGGAAGTTCATTCGGCTGATGCCACACCAGAAGTGCTCATTCCAAACACTGATGGAAGCCTTACGCTAGAATACATGGCTGGAATTAATGGGCGAATAGGAGctatagatgatgatgatgataatattaTAGCTTTTAGAGAAGGATTGTAA 1059 0.4863 MIEQDETDFGGFFDHIDDLLDFPADDVDVGAASFPAATMTCPSIWPAVSDPVFSGNSSPELSMPYEDIVQLEWLPNFVDYDPSCGSLTLEKVEQKQNQFQTFSPVSVLERGGGGGGSSSSSSGEKNAPCSPEIYIPVPSCVRGARSKRPRPATFNPRSAMQCFISPAALSVGENTIIMTLPNNAISKTSSDSDQNFAESRPLIKKKKKKARSSHHNIVASQEVRKCMHCEITKTPQWRAGPFGPKSLCNACGVRYKSGRLFPEYRPAASPTFCPSLHSNSHQKVLEMRSKSGEVTAAAAAASMEVHSADATPEVLIPNTDGSLTLEYMAGINGRIGAIDDDDDNIIAFREGL 352
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto10g1130 352 MobiDBLite consensus disorder prediction 113 127 - -
Sto10g1130 352 MobiDBLite consensus disorder prediction 105 130 - -
Sto10g1130 352 Pfam GATA zinc finger 226 259 IPR000679 GO:0006355|GO:0043565
Sto10g1130 352 SMART GATA_3 220 270 IPR000679 GO:0006355|GO:0043565
Sto10g1130 352 Gene3D - 219 270 IPR013088 GO:0006355|GO:0008270
Sto10g1130 352 PANTHER GATA TRANSCRIPTION FACTOR 4 328 - -
Sto10g1130 352 CDD ZnF_GATA 225 272 IPR000679 GO:0006355|GO:0043565
Sto10g1130 352 PANTHER GATA TRANSCRIPTION FACTOR 8 4 328 - -
Sto10g1130 352 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 224 283 - -
Sto10g1130 352 ProSiteProfiles GATA-type zinc finger domain profile. 220 256 IPR000679 GO:0006355|GO:0043565
Sto10g1130 352 ProSitePatterns GATA-type zinc finger domain. 226 251 IPR000679 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto10g1130 Sto-Chr10 10953651 10958458 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto10g1130 6 293 C2C2-Gata Transcription Factor Family AT1G08010 34.062 7.22e-41 144
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Sto10g1130 GATA 3.4e-15 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto10g1130 - - gmx:100815693 326.635