Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto10g1061 ATGGGGAAGGACGTGGTTGAGGGGTCGTACGCCGCCAAGGACTACCACGACCCGGGACCGGTTCCGGTGGTCGACACGGAGGAGCTGAGGAAGTGGTCCTTCTACAGAGCACTGATAGCCGAGTTCATAGCTACTCTACTTTTTCTTTACGTCACTGTGCTTACTGTGATTGAGTACAAGAGCCAGACTGATACGGAAGCTGAAGGAGGTGACGCTTGTGCCGGTGTCGGCCTTCTCGGCGTCGCATGGGCCTTCGGCGGCATGATCTTCCTCCTCGTCTACTGCACTGCCGGAATTTCAGGGGGTCACATAAACCCAGCCGTAACATTCGGGCTGGTGCTGGCTCGGAAGGTGTCGGTGGTTCGAGGCGTAATGTACATGGTGGCTCAGTGCCTGGGGGCCATCTGTGGAGTTGGGTTGGTGAAGGCCGTCCAGAAGGGTCACTACAGAAGGTACGGCGGTGGAGCCAACCAGCTAGCCGATGACTACAGCATGGGCGTTGGGTTGGGCGCTGAGATCATTGGAACCTTTGTGTTGGTTTACACTGTCTTCTCTGCTACTGATCCCAAGAGGAGTGCCAGAGACTCCCATGTCCCCATCTTGGCCCCACTTCCCATTGGTTTTGCTGTGTTTGTGGTTCACTTGGCCACCATCCCCATCACTGGTACTGGCATTAACCCAGCTAGGAGTCTTGGAGTTGCTGTCATTTACAACCAACGCAAAGCTTGGAACCACCATTGGATGTTTTGGGTAGGACCATTCATTGGGGCAGCCCTTGCAGCTTTTTACCACCAATTCGTTCTGAGGGCAAGTGCAGCTAAAGCTCTTGGATCATTTCGAAGTGCCCCCAACATTtga 858 0.5455 MGKDVVEGSYAAKDYHDPGPVPVVDTEELRKWSFYRALIAEFIATLLFLYVTVLTVIEYKSQTDTEAEGGDACAGVGLLGVAWAFGGMIFLLVYCTAGISGGHINPAVTFGLVLARKVSVVRGVMYMVAQCLGAICGVGLVKAVQKGHYRRYGGGANQLADDYSMGVGLGAEIIGTFVLVYTVFSATDPKRSARDSHVPILAPLPIGFAVFVVHLATIPITGTGINPARSLGVAVIYNQRKAWNHHWMFWVGPFIGAALAAFYHQFVLRASAAKALGSFRSAPNI 285
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto10g1061 285 PANTHER AQUAPORIN OR AQUAGLYCEROPORIN RELATED 7 281 IPR034294 -
Sto10g1061 285 ProSitePatterns MIP family signature. 103 111 IPR022357 -
Sto10g1061 285 Gene3D Glycerol uptake facilitator protein. 21 285 IPR023271 -
Sto10g1061 285 PANTHER AQUAPORIN PIP2-4-RELATED 7 281 - -
Sto10g1061 285 TIGRFAM MIP: MIP family channel proteins 40 264 IPR000425 GO:0015267|GO:0016020|GO:0055085
Sto10g1061 285 PRINTS Major intrinsic protein family signature 36 55 IPR000425 GO:0015267|GO:0016020|GO:0055085
Sto10g1061 285 PRINTS Major intrinsic protein family signature 85 109 IPR000425 GO:0015267|GO:0016020|GO:0055085
Sto10g1061 285 PRINTS Major intrinsic protein family signature 122 141 IPR000425 GO:0015267|GO:0016020|GO:0055085
Sto10g1061 285 PRINTS Major intrinsic protein family signature 171 189 IPR000425 GO:0015267|GO:0016020|GO:0055085
Sto10g1061 285 PRINTS Major intrinsic protein family signature 207 229 IPR000425 GO:0015267|GO:0016020|GO:0055085
Sto10g1061 285 PRINTS Major intrinsic protein family signature 247 267 IPR000425 GO:0015267|GO:0016020|GO:0055085
Sto10g1061 285 SUPERFAMILY Aquaporin-like 28 269 IPR023271 -
Sto10g1061 285 Pfam Major intrinsic protein 28 264 IPR000425 GO:0015267|GO:0016020|GO:0055085
Sto10g1061 285 CDD MIP 36 267 IPR000425 GO:0015267|GO:0016020|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto10g1061 Sto-Chr10 10221960 10227731 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto10g1061 1 285 Major Intrinsic Protein MIP AT3G54820 78.049 4.04e-165 457
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto10g1061 K09872 - gmx:100782690 483.796
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto8g2414 8 16443050 16445448 Sto10g1061 10 10221960 10227731 ECH
Sto10g1061 10 10221960 10227731 Sto10g1061 10 10221960 10227731 ECH