Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto10g1007 ATGGAGAAACCTTCCACGAAATCCATATCGGTGTTGCCTTACGAAACCCCGAGGCTCCGCGACCACTACCGCGTCGGGAAGAAGCTAGGGCAAGGCCAATTCGGGACCACATACCTGTGTATGCACAAAACCTCGGGGATCCACTACGCTTGCAAATCGATCCCGAAGCGGAAATTGATGTGCAAGGAGGACTACGACGACGTCTGGAGGGAGATTCAGATCATGCACCATCTGTCGGAGCACCCGAATGTGGTTAGAATTCAAGGGACGTATGAGGACTCTGTGTTTGTGCATCTGGTGATGGAGTTGTGCGCCGGCGGAGAGCTGTTTGATAGGATCATCCAAAAGGGGCATTACAGTGAGAAAGAGGCGGTGAAGCTGATAAGGACCATTGTTGGTGTGGTGGAAGCTTGTCACTCTCTTGGGGTCATGCATAGGGATCTCAAGCCTGAGAATTTCTTGTTTGATTGCACAGGTGAAGCTGCCCAGATGAAGGCTACGGATTTTGGGCTCTCTGTGTTTTATAAGCCagGACAAGTCTTCTCCGATGTAGTTGGAAGTCCCTACTATGTTGCCCCTGAGATATTGTGCAAGCACTATGGACCAGAAGTGGATGTATGGAGTGCTGGAGTTATCCTCTACATCTTGTTGAGCGGGGTGCCACCTTTTTGGGCTGAAACTGAACCAGGAATTTTTAGACAAATTTTACAAGGAAAGCTTGATTTTCAATCTGAACCTTGGCCAAGCATCTCAGACAGTGCTAAAGATTTGGTAAAGAAAATGCTTGAAAGGGACCCTAAGAAAAGAATTTCTGCTCATGAAGTCTTATGTCACCCATGGATAAATGATGATAATGTTGCCCCAGACAAACCTTTGGATTCTGCAGTTTTGTCACGCTTGAAGCATTTCTCAGCCATGAATAAAGTAAAGAAAATGGCACTACGGGTTATCGCAGAAAGGCTCTCAGAAGAAGAAATTGGTGGTTTAAAAGAGTTGTTCAAAATGATTGACACAGACAACAGTGGGACAATAACTTTTGAGGAACTCAAAGAAGGTTTGAGAAGAGTGGGTTCCGATCTAATGGAATCTGAAATTAAATCACTTATGGATGCGGCTGATATAGACAATAGTGGAACCTTAGACTATGGTGAATTTCTAGCTGCTACACTGCACATGAATAAGATGGAAAGAGAGGAGAATTTAGTTGCAGCCTTTTCCTATTTTGATAAAGATGGTAGTGGTTACATCACCATTGATGAGCTTCAACAAGCTTGCAAAGAGTTTGGCTTAGGTGATGCAAATCTAGAAGATATGTCAGAGATTGATCTAGACAATGATGGGAGAATTGATTATGGGGAATTTGTAGCTATGATGAAAAAGGGTGATGGAGGCATTGGACAGAGTAGAACCATGAAAGGCAATTTGAACTTCATTTTAGAAGATGCCTATCAAGTAAAAGACTCATCTTGA 1470 0.4381 MEKPSTKSISVLPYETPRLRDHYRVGKKLGQGQFGTTYLCMHKTSGIHYACKSIPKRKLMCKEDYDDVWREIQIMHHLSEHPNVVRIQGTYEDSVFVHLVMELCAGGELFDRIIQKGHYSEKEAVKLIRTIVGVVEACHSLGVMHRDLKPENFLFDCTGEAAQMKATDFGLSVFYKPGQVFSDVVGSPYYVAPEILCKHYGPEVDVWSAGVILYILLSGVPPFWAETEPGIFRQILQGKLDFQSEPWPSISDSAKDLVKKMLERDPKKRISAHEVLCHPWINDDNVAPDKPLDSAVLSRLKHFSAMNKVKKMALRVIAERLSEEEIGGLKELFKMIDTDNSGTITFEELKEGLRRVGSDLMESEIKSLMDAADIDNSGTLDYGEFLAATLHMNKMEREENLVAAFSYFDKDGSGYITIDELQQACKEFGLGDANLEDMSEIDLDNDGRIDYGEFVAMMKKGDGGIGQSRTMKGNLNFILEDAYQVKDSS 489
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto10g1007 489 SUPERFAMILY EF-hand 310 461 IPR011992 -
Sto10g1007 489 CDD EFh 329 388 IPR002048 GO:0005509
Sto10g1007 489 CDD EFh 401 459 IPR002048 GO:0005509
Sto10g1007 489 ProSiteProfiles EF-hand calcium-binding domain profile. 396 431 IPR002048 GO:0005509
Sto10g1007 489 Pfam EF-hand domain pair 399 459 IPR002048 GO:0005509
Sto10g1007 489 Pfam EF-hand domain pair 329 389 IPR002048 GO:0005509
Sto10g1007 489 ProSiteProfiles EF-hand calcium-binding domain profile. 324 359 IPR002048 GO:0005509
Sto10g1007 489 Gene3D - 293 461 - -
Sto10g1007 489 ProSitePatterns EF-hand calcium-binding domain. 409 421 IPR018247 -
Sto10g1007 489 ProSitePatterns EF-hand calcium-binding domain. 442 454 IPR018247 -
Sto10g1007 489 PANTHER SERINE/THREONINE-PROTEIN KINASE 11 472 - -
Sto10g1007 489 ProSiteProfiles EF-hand calcium-binding domain profile. 438 464 IPR002048 GO:0005509
Sto10g1007 489 ProSitePatterns EF-hand calcium-binding domain. 373 385 IPR018247 -
Sto10g1007 489 ProSiteProfiles Protein kinase domain profile. 23 281 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sto10g1007 489 SMART efh_1 364 392 IPR002048 GO:0005509
Sto10g1007 489 SMART efh_1 433 461 IPR002048 GO:0005509
Sto10g1007 489 SMART efh_1 328 356 IPR002048 GO:0005509
Sto10g1007 489 SMART efh_1 400 428 IPR002048 GO:0005509
Sto10g1007 489 Pfam Protein kinase domain 23 281 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sto10g1007 489 ProSitePatterns Serine/Threonine protein kinases active-site signature. 143 155 IPR008271 GO:0004672|GO:0006468
Sto10g1007 489 Gene3D Transferase(Phosphotransferase) domain 1 109 292 - -
Sto10g1007 489 ProSitePatterns Protein kinases ATP-binding region signature. 29 52 IPR017441 GO:0005524
Sto10g1007 489 PANTHER BNAA09G05220D PROTEIN 11 472 - -
Sto10g1007 489 SUPERFAMILY Protein kinase-like (PK-like) 19 294 IPR011009 -
Sto10g1007 489 CDD STKc_CAMK 22 280 - -
Sto10g1007 489 Gene3D Phosphorylase Kinase; domain 1 25 108 - -
Sto10g1007 489 SMART serkin_6 23 281 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sto10g1007 489 ProSitePatterns EF-hand calcium-binding domain. 337 349 IPR018247 -
Sto10g1007 489 ProSiteProfiles EF-hand calcium-binding domain profile. 360 395 IPR002048 GO:0005509
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto10g1007 Sto-Chr10 9753315 9762056 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto10g1007 1 489 EF-hand Containing Proteins AT4G09570 81.098 0.0 834
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Sto10g1007 Pkinase 3.5e-76 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto10g1007 K13412 - jre:108991330 855.129