Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto10g0941 ATGACAGATTTTCAACCTCTACAACAGAAGCCTGAACCTACTGATGCCCATACTGAGTTTGAACGTGGACTGGAGGAGTTTATGCGGGGGCAACTGGATGATTGCATGTCATTTGCTTCGTGTAGCTCTGCCCGAACACCAGACGCGGAGGATGATGAGGGCGATCAGCTAGTTAGGAGGAGGCGGAGATCTGACCTTGAAGGGGATGATTTAGCGGAGTCATCAGCTGCGCGTCGGCGCCACTCGCGGATTTTGAGCAGATGGGCTGCACACCAGGCACAAGAGATGATAACTACAATTGAGAGGAGGAATAGGGAGTCTGAATTAATGGCACTTGCAGGACTACACACAGTCTCAATGCTGGATTCTTCTTTTTTGAGGGGATCAGAGCCTCCAACTACTGGCCAGGAGGGGGCTGTAGAGAGGCCCAGCACTCAGGCATCTGCAATTCTTCAGATGTGGCGTGAATTGGAGGATGAGCACTTACTGAATCGGGCACGTGAAAGAATGAGGGAAAGGTTGCGGCGACAAAGGAATGCTGATTCTAATACCAATGAATCAAGTACCATGTCAGATAGTCGAGGCAGTGAGAATCAAGGGAGTTTGGTGGATGcaagtgaaagtgaaaatgaTTATGGGACTTGGTCACATGATCAAATTCAATCACAGCATGAAAATGGGGATCATAATGGGTCTAGCAGGGAGCAATCTCCAGATCTTGGTGAAGTTGAGAGGGAGAGAGTTAGACAGATTGTTAGAGGATGGATGGAAAGTGGCATTAGTGATCATTCATCTAATGCAAGTCAGAGAAACAATAATCGCAGAGCAGAATGGCTTGGTGAAACGGAACGTGAAAGGGTAAGAATTGTTAGGGAGTGGGTGCAAATGACAAGTCAGCAAAGAGGTTCTCGTGGGAGCCGGAGGGATAGTCAAGCCACTGAAAGTGGTGCTCAAGCTGACCAAGTTCGTGATGGATTGATAACTGATCATGATGAGGGCCAGCCAGAGCATGTTCGTCGTGACTTGTTAAGGTTGCGTGGAAGACAAGCTCTGGTTGATTTACTTGTGAGGGTAGAAAGGGAAAGACAAAGAGAGCTGCAGGGTTTGTTGGAGCACCGGGCTGTTTCTGATTTTGCTCATCGCAACCGCATTCAGTCATTACTCAGAGGTAGATTCCTTCGAAATGAAAGAACTGTAGAGGATGAGAGGCCTCCTTCAATGGCTGCAAATGAATTAGTTCAGTTAAGACAACGGCACACAGTCTCTGGTTTAAGAGAAGGGTTTCGCTCAAGATTAGAAAATATTGTTCGTGGTCAAGCAAGCAGCAATTCTGATGCCACATCTAATGGTAACATCAGTGAAACTAGAAGTGACCTGAACCAAACAAACAATTCAATAGATTCCCAGCATGAAAATTATGAGCAAGGGCAGATTAGGAGTCTGGATATTGATGTACAGCAGTTGGCTGATCAAACAGGAAATTTTGATAGCAGCAATAGTGAGAGTTGGCAAGAAACTGGTAATCAAGGGGGGAACTGGCAGGAACAAATTACTGAAGATGATCGAGGGAATTGGCAACGTGCAGTTAGTGATTGGCCCCAGGATACACCGAGAAATGTAGAAGGGGAGGATACTCATCCACGAGAAGCTCAGGGAATTTGGCATGAGGATAATTCAAGGGAAGCTGCTGGTAATTGGTCTGAAGAACCTTCTGGGCCTCCAAGGAATCGCAGAGGTGCTCCTGTTAGGAGATTCAATAGATTTCATCCACCTGATGATGAAAATGTATATAGCATGGAGCTTAGAGAACTTTTGAGCAGGAGAAGTGTTTCTAATCTTCTTCGCAGTGGTTTCCGTGAAAGTCTGGACCAACTAATCCAGTCATATGTCGAAAGGCAAGGTCGTGCTCCAATCGACTGGGATTTGCACAGAAACTTGCCGACACCAACTCCTGCTTCACCTGATAGGGATCCTGAGCAACAGGCGGATGAACGCAATGGGGTTCAACATGATGCCATTAATAGGCCTTCGCTAGTGTTGCCATCTCCACCAGTCCCCCCACCACAACCACTTTGGCACCAGGATTTGCATCAGACTGGTTGGTCTCGCCATAGCATGCATCGTTCTGAAATTGAATGGGAAATAATCAATGATTTGAGATCAGATATGGCACGACTTCAGCAGGGCATGAATCATATGCAGAGGATGTTGGAGGCCTGCATGGATATGCAGCTGGAGTTACAGCGTTCTGTCAGACAGGAAGTCTCTGCAGCACTGAATCGGTCAGCTGGTGAAAAAGGATTGGGTGCTGAGACATCCGAGGATGGGTCTAAATGGGGCCATGTGAAGAAAGGAACTTGCTGTGTTTGTTGTGATAGTCATATTGATTCGCTCTTGTACAGATGTGGTCACATGTGCACTTGTTCAAAATGTGCTAATGAGTTAGTTCGTGGAGGAGGAAAGTGCCCTTTATGCCGAGCACCTATTGTGGAGGTGATCCGAGCATATTCCATTATGTAA 2520 0.4647 MTDFQPLQQKPEPTDAHTEFERGLEEFMRGQLDDCMSFASCSSARTPDAEDDEGDQLVRRRRRSDLEGDDLAESSAARRRHSRILSRWAAHQAQEMITTIERRNRESELMALAGLHTVSMLDSSFLRGSEPPTTGQEGAVERPSTQASAILQMWRELEDEHLLNRARERMRERLRRQRNADSNTNESSTMSDSRGSENQGSLVDASESENDYGTWSHDQIQSQHENGDHNGSSREQSPDLGEVERERVRQIVRGWMESGISDHSSNASQRNNNRRAEWLGETERERVRIVREWVQMTSQQRGSRGSRRDSQATESGAQADQVRDGLITDHDEGQPEHVRRDLLRLRGRQALVDLLVRVERERQRELQGLLEHRAVSDFAHRNRIQSLLRGRFLRNERTVEDERPPSMAANELVQLRQRHTVSGLREGFRSRLENIVRGQASSNSDATSNGNISETRSDLNQTNNSIDSQHENYEQGQIRSLDIDVQQLADQTGNFDSSNSESWQETGNQGGNWQEQITEDDRGNWQRAVSDWPQDTPRNVEGEDTHPREAQGIWHEDNSREAAGNWSEEPSGPPRNRRGAPVRRFNRFHPPDDENVYSMELRELLSRRSVSNLLRSGFRESLDQLIQSYVERQGRAPIDWDLHRNLPTPTPASPDRDPEQQADERNGVQHDAINRPSLVLPSPPVPPPQPLWHQDLHQTGWSRHSMHRSEIEWEIINDLRSDMARLQQGMNHMQRMLEACMDMQLELQRSVRQEVSAALNRSAGEKGLGAETSEDGSKWGHVKKGTCCVCCDSHIDSLLYRCGHMCTCSKCANELVRGGGKCPLCRAPIVEVIRAYSIM 839
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto10g0941 839 MobiDBLite consensus disorder prediction 492 519 - -
Sto10g0941 839 MobiDBLite consensus disorder prediction 46 78 - -
Sto10g0941 839 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 774 837 IPR013083 -
Sto10g0941 839 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 1 839 - -
Sto10g0941 839 MobiDBLite consensus disorder prediction 173 244 - -
Sto10g0941 839 MobiDBLite consensus disorder prediction 296 318 - -
Sto10g0941 839 MobiDBLite consensus disorder prediction 41 78 - -
Sto10g0941 839 MobiDBLite consensus disorder prediction 181 221 - -
Sto10g0941 839 Coils Coil 716 736 - -
Sto10g0941 839 MobiDBLite consensus disorder prediction 640 666 - -
Sto10g0941 839 MobiDBLite consensus disorder prediction 492 594 - -
Sto10g0941 839 MobiDBLite consensus disorder prediction 124 146 - -
Sto10g0941 839 MobiDBLite consensus disorder prediction 259 275 - -
Sto10g0941 839 ProSiteProfiles Zinc finger RING-type profile. 787 826 IPR001841 -
Sto10g0941 839 MobiDBLite consensus disorder prediction 537 556 - -
Sto10g0941 839 CDD mRING-HC-C3HC5_NEU1 786 826 - -
Sto10g0941 839 PANTHER ZINC FINGER, RING/FYVE/PHD-TYPE-RELATED 1 839 - -
Sto10g0941 839 MobiDBLite consensus disorder prediction 296 335 - -
Sto10g0941 839 MobiDBLite consensus disorder prediction 256 277 - -
Sto10g0941 839 MobiDBLite consensus disorder prediction 1 22 - -
Sto10g0941 839 SUPERFAMILY RING/U-box 786 832 - -
Sto10g0941 839 MobiDBLite consensus disorder prediction 435 466 - -
Sto10g0941 839 Pfam Zinc finger, C3HC4 type (RING finger) 784 831 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto10g0941 Sto-Chr10 8949065 8955456 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto10g0941 787 833 C3H Transcription Factor Family AT3G06140 42.553 1.24e-06 49.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto10g0941 - - gmx:100805607 1354.73
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto10g0941 10 8949065 8955456 Sto10g0941 10 8949065 8955456 ECH