Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto10g0848 ATGAATTGCTTTATGGTTTGTGAGTCTCGATGGTGGATGGTGACAATAGTGTTGTACACTTGCATTTGGATCCCATTGGTTGGACTAAAGAGAGCTCTCATAGCTCTTTTCTCCTTCAAAGGAACATCATCTACACATATGGAGTGGCCAGAGTTTCCTCTGCTTCCTGTGGCCAGGTATGAGGATTTgaagacgacgacgacgacgacacataaatcttcttcttccatttccGAAACCACCATCATAGAGGAAGATTGCTCAATTTGCTTATTGGAGTTTGAGGGAGGAGAAGAGATAGTGTGCAAGTTGGATAGGTGTGGGCATGTTTTCCATATGAATTGCATTGAGGGATGGTTACATAGGAACCACTTCACTTGCCCATTGTGGGGATGTCGGAGGATTACTATCAGCAACATTGACTTCAAAAAATGGGAAGATTCCCCCTTGTTCGCCACAGATGGCATGAAGCCATCACCCTCAACTGCTTTAATTCAAATGATGATACAAACCTTATGTTTCAATGAAGATTTCAAGGCACCTTTTTCGAATCTACCTTTGGGACATGATGCAAAAGTTTCTGAACTTTTGATGCATGTGGGACTTGACTATGAGAGATCGTTGGAAGAATTATGGGCATGTGTGGAGAAAGATTTGGAAGGAAAACATACCTCCTAA 678 0.3923 MNCFMVCESRWWMVTIVLYTCIWIPLVGLKRALIALFSFKGTSSTHMEWPEFPLLPVARYEDLKTTTTTTHKSSSSISETTIIEEDCSICLLEFEGGEEIVCKLDRCGHVFHMNCIEGWLHRNHFTCPLWGCRRITISNIDFKKWEDSPLFATDGMKPSPSTALIQMMIQTLCFNEDFKAPFSNLPLGHDAKVSELLMHVGLDYERSLEELWACVEKDLEGKHTS 225
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto10g0848 225 CDD RING-H2 87 133 - -
Sto10g0848 225 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 55 137 IPR013083 -
Sto10g0848 225 SUPERFAMILY RING/U-box 86 139 - -
Sto10g0848 225 PANTHER RING ZINC FINGER PROTEIN-RELATED 1 132 - -
Sto10g0848 225 PANTHER ZINC FINGER, C3HC4 TYPE (RING FINGER) PROTEIN 1 132 - -
Sto10g0848 225 ProSiteProfiles Zinc finger RING-type profile. 87 129 IPR001841 -
Sto10g0848 225 Pfam Ring finger domain 86 133 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto10g0848 Sto-Chr10 8016737 8018457 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto10g0848 87 138 C3H Transcription Factor Family AT4G38140 55.769 4.33e-12 60.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto10g0848 - - pvu:PHAVU_007G012000g 125.561