Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto10g0833 ATGATGCTAGATAGAACtagaagaatgaaaaagaagaacaaAGAACTTTCTGTTCCTCGTCCTGCATGTTCATGGGTTTACTTCAGTAAGGATTTTATCAAAGAGTACATTGCTTCCCATCCTGAGTCTTCTGGCCTTAAAGCTCTTTTCTTTCTCCAGGCAACAAAGGCTGCATCAGATGCTTGGAAATCAATGAGCcatgaagagaaagaaaaatacacTAGGCATGCACGTGAGGTGTGGGATTGCTACTTGAATAAAAGTCCCATCCATAACCCGAAGCCCAGAAAACAGACAAAGCTGGTTACAAGATGCTCACCTGGTCGGTTATTCAATTTATTACAGCGTCTCACACCTGAGCAAAAGGATGCAGTTAAGAGTATGGGATTTGGCAGCCTCCTTGGTCTTAGATGCCGGACGCTTCGTCGCAGTTTGTGCCATTGGCTATTGGAGAGGTTTAACACCACAAATTGCAGCTTGGAGATCTGTAATGAGTGCATCCCTTTAACTCCAAAAGATGTAGAGATAGTAATGGGATTATCAGCTAGTGGGAAAGATGTGGTGAACTCAGGTCCAGATGACTTAATTTCAGACTTGCGCAACAGTTATAATGCAACTAATCATGGAATTTCAGTGCGACTTCTGGAGGAGCGATTGGCAGGTCCAGAAGCTGGGGAGGATTTCAGGAGATCTTTTGTTCTCTATGCATTGGGCACCCTTTTGTCTCCAACAGCTAGATTGGATGTTAGCCCTTCTTTCCTCCACTTTCTGACAAATATGGATCTGGTCCATCAGTACAACTGGGGTAAATTCTTGCTTGATAGACTAGTTAGAGAGGTAACACGCTTCCGTCAAGGAAGGCAACAGGCAGTTGGTGGTTGTCTCCTGTTTCTCCAGCTGTTCTACTATGAGATCATCTCTTTTGAGGATTCTTCTGCTTTCGTTCCAACAATTGTTCCATGCTTGTTTTATTGGGGTGAGGAGGAGATTACTGAGAGAGAAAAACGAGAAAAGGAACTTGGTGGCTATGGTTTCGGGGAGGATtctgagtttgtattgattagGAACGCTTTAGCTTTGCAGGTTATATATAAGGAGAAGTGCCATCGGTTGGAGTCAGAGTACAGAGGTTACCAAGATGGTCAGAAAATTAGTATATTAGGCACTGGGATTGAGTATGGTCCTGTACTTGAACAGGAGTTTGACCAGGACAACGTCCCAGATTTTCTCAAGAATGAATCCTTGGATTGTGGAGATGTAGAGGTTGTAGTTGAATCAATCAAAGTTCCATGCCAGAACCGAGAATATGGTTGCAATGAAACTCTGGACTACATGACCTGTAATGACCATGAAGCAACCTGCATTTATGCTCCATGTGCTTGCCCACTTCAAGATTGCAACTATGTAGGGTCATCTGAACAGTTGGCACTACACTTCAGCAGTAGACACTGGGATTCTGGAAGGCGATTCAAATATAACTACCCGTTGACGATATCGTTACACACTGATGAACGGTACCTCGTGCTCCAAGCCGAAGAAGACGGTGTTCTCTTTGTTCTCAACAAGGGCACAGAAAGTCTTGGGAACACAGTGATGATAACTTGTGTTGGTCCAAGCTCATCAAAGGAGAGGTTTTCTTATGATATTGTATCATCTAAAGGAAGCAGTTCTCTCAGTTTGAAGTCAATGACTAAAAACTTTCCCCAATGGATGGAGGATTTTCCTCCAATGGATTTTCTTATGATTCCTTCCCATTTCCTTGCTTCTTCTAGGCAGCTCAATCTAGATATTTGTATATGGAATTCTAAGGAATGTAATGCAGAATACTCTTGA 1833 0.4168 MMLDRTRRMKKKNKELSVPRPACSWVYFSKDFIKEYIASHPESSGLKALFFLQATKAASDAWKSMSHEEKEKYTRHAREVWDCYLNKSPIHNPKPRKQTKLVTRCSPGRLFNLLQRLTPEQKDAVKSMGFGSLLGLRCRTLRRSLCHWLLERFNTTNCSLEICNECIPLTPKDVEIVMGLSASGKDVVNSGPDDLISDLRNSYNATNHGISVRLLEERLAGPEAGEDFRRSFVLYALGTLLSPTARLDVSPSFLHFLTNMDLVHQYNWGKFLLDRLVREVTRFRQGRQQAVGGCLLFLQLFYYEIISFEDSSAFVPTIVPCLFYWGEEEITEREKREKELGGYGFGEDSEFVLIRNALALQVIYKEKCHRLESEYRGYQDGQKISILGTGIEYGPVLEQEFDQDNVPDFLKNESLDCGDVEVVVESIKVPCQNREYGCNETLDYMTCNDHEATCIYAPCACPLQDCNYVGSSEQLALHFSSRHWDSGRRFKYNYPLTISLHTDERYLVLQAEEDGVLFVLNKGTESLGNTVMITCVGPSSSKERFSYDIVSSKGSSSLSLKSMTKNFPQWMEDFPPMDFLMIPSHFLASSRQLNLDICIWNSKECNAEYS 610
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto10g0833 610 SMART hmgende2 17 93 IPR009071 -
Sto10g0833 610 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 422 479 IPR013083 -
Sto10g0833 610 PANTHER E3 UBIQUITIN-PROTEIN LIGASE SINA-LIKE 2 8 608 - -
Sto10g0833 610 CDD HMG-box 18 89 - -
Sto10g0833 610 Pfam Seven in absentia protein family 420 567 IPR018121 GO:0005737|GO:0006511|GO:0007275
Sto10g0833 610 SUPERFAMILY HMG-box 5 88 IPR036910 -
Sto10g0833 610 Pfam HMG (high mobility group) box 19 86 IPR009071 -
Sto10g0833 610 ProSiteProfiles Zinc finger SIAH-type profile. 426 484 IPR013010 GO:0008270
Sto10g0833 610 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 18 92 IPR009071 -
Sto10g0833 610 PANTHER E3 UBIQUITIN-PROTEIN LIGASE SINA-LIKE 4 8 608 IPR044286 -
Sto10g0833 610 SUPERFAMILY TRAF domain-like 426 599 - -
Sto10g0833 610 Gene3D High mobility group box domain 4 90 IPR036910 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto10g0833 Sto-Chr10 7861837 7866723 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR HMG Sto10g0833 Sina 8.1e-17 CL0389
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto10g0833 - - gmx:100782920 871.692