Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto10g0771 ATGTCCTCACAATCTTGTAAACAACTCAAAACCATTCCAAAACCCGAACCAACATCTTCTTCAGCAAGCATCGTGGCCGACAATGACGACCTCTTGTTCGAAATCCTCCTTCGTCTCCCCATCCCATCCCTTCTCAAATTCAAATCCGTCTCTAAGCATTGGCTCTCTCTCATTTCCAACCCCCAATTCTCTCGCCGTCGCATCCCATTCCTCATATTTCCCACATGTTCAATCTCAAGAAAATTTCCACGATACAATTTCGTCGATTTCAATCCCAATccccttaaccctaaccctaaccctaaccctaaccccatCAATATCGCTCCCTTTCCTGGTCCCTTTGAAAAGCTAGCTTACATTAAAAGCGCAATATCGGTCGATGTTCTGCAATCATGTAATGGGCTTGTTTTGTGTCGTTCTGATTATCGTGTCGAAATTCATTATTACGTCTGTAACCCCACTACCAAGCAGTACTCTGTTCTTCCTCCATTGAAGAAGTGCTCTGGATTACTTAACTTCGTGAGTGGTGTTTGTTTGGCTTTTGACCCTTCTAAATCTCCTCATTACAAAGTTGTTTGTGTAAGGTTTTGTGGTCTTAGCTACCAATATCATTACCAAATTGAGATTTACTCATCTGAAAATGGACTTTGGAGGGTCTCTAATTGTTCTTTCACTGGCTGTGGTTCTGTAGATTTCCACCGCTGTGTGTTTTGGAATGGGGCTCTTCATTGGTTAAGCATTTGGGGAAGCCCTTTATTATACTTCAATGTTGATGAAGAGGAAGTTAAAGATATGCCAATGCCTTCAATGGTAcaccatgatgatgatgattgggATCAAACTCATCAAAGACAAATTGAGTATTTTGGAGAGTCCAGGGATCATTTGCATCTTATTGAGATTTATGGGCGTAAGACATTGGAGTTTAATGTGTATGAGATGAAAAGGGACTATTCTGGTTGGTTTGTGAAGTACCATGTTGATCTTAATGCCGTTTCTATTGCATTTCCAGAGATGATTTTGGAGGATCTTTCACCAAATGACTGGGACTATTATCGTTTTGATGTGGTTTCTGTTATCACAGCTGAGCCGATTGAGAATTCCTTCTTGGTGCTAAAAATCTATGGGAAATTTGTGCGATACAATTTTGAAGACAAATCATTTCATAAACTCCATGAAATCCCTGTCCCTGATTCTTTACTAGTCTCTTGCGGTTCTTTCGGCATGGCTAACAAGGCTCTATCTTCAGAATCGACGATCTTGGAGAATAAGAAGGCGCCAAATCGGCTAGTTGTTGATGAGGCTACCAACGATGATAACTCCGTTGTCACACTTAATCCAGAAACGATGGAAAAACTCCAACTCTTACACGGCGACATAATTTTGATTAAGggaaagaaaaggaaagataCAATCTGTATTGCAGTTGCTGATGAGACATGTGAGAAaccaaaaataagaatgaacaAGGTCATAAGAAACAACCTCAGGGTTAGGCTCGGCGATGTTGTTTCTGTGCATGAATGCGCTAATTTCCAATATGGAAAGCGAGTCCACATTCTGCCTCTGGATGATACTATTGAAGGAGTAACGGGAAATCTCTTTGATGCATACTTAAAACCTTATTTTTTGGATGGGTATCGCCCAATGAGGAAGGGTGACTTGTTCCTTGTGAGAGGGGGCATGAGAAGTGTAGAATTCAAGGTTATTGAAACTGACCCTTCTGAGTACTGTGTTGTGACACCGGACACTAAAATCTTTTTTGAAGGAGAGCCTGTGAGAAGGGAAGACCAAACTCGTCTAGACGAGGTTGGTTACGACGATGTTGGTGGCGTAAGAAAACAGATGGCCCAGATTCGAGAATTGGTGGAATTGCCACTGAGGCATCCACAGTTGTTCAAGTCTATTGGTGTTAAGCCACCCAAAGGAATCTTGCTGTATGGCCCTCCTGGCTCCGGTAAGACTACGATTGCTCGAGCAATTGCGAATGAAACCGGTGCCTTCTTTTTGTGCATTAATGGACCTGAGATTATGTCAAAATTGGCTGGTGAGAGTGAAAGCAACCTGAGGAAGGCATTTGAGGAAGCTGAAAAGAATGCGCCATCTATTATCTTCATTGATGAGATAGATTCAATTGCTCCCAAGCGGGAGAAGACTCATGGAGAAGTTGAGAGGAGGATTGTTTCGCAGTTGTTGACGCTCATGGACACATATATTGGTGTTCCGGATGAAGGTGGCCGTCTTGAGGTGCTACATATCCACACCAAGAATATGAAACTTGCTAATGATGTTGATTTGGAAAACATTTCTAAGAACAGCCATGGCTATGTTGGTGCTGACCTTGCTGCTTTGTGTACTGAAGCTGCACTACAATGCATCAGAGAGAAAATGGATGTGATTGATCTAGAAGACGAGACAATTGATGCTGAGATACTCAACTCAATGGTAGTGAGAAATGAGCATTTCCAGACTGCTCTTGGATCTAGCAATCCTTCTGCTCTCCGTGAGACTTTTGTTGAAGTGCCCAATGTCAGTTGGGATCATATTGGTGGCCTTGAGAATGTTAAGAGAGAACTCCAAGAGACTGTTCAATACCCAGTGGAACACCCtgaaaaatttgaaaagttTGGAATGTCGCCATCGAAGGGGGTTCTTTTCTATGGTCCTCCTGGATGCGGTAAGACACTTTTGGCTAAAGCCATTGCCAGTGAATGCCAAGCCAACTTCATCAGTGTGAAAGGTCCTGAGCTACTAACAATGTGGTTCGGAGAAAGTGAGGCTAATGTTCGGGAAATATTCGACAAGGCTCGTGCTTCTGCCCCGTGTGTCCTGTTCTTTGATGAACTTGACTCAATTGCCATTCAGAGAGGTAGTCATATAGGAGATGCTGGAGGTTCTGCTGATAGGGTTTTGAACCAACTTCTCACAGAAATGGATGGGATGTCAGTCAATAAAACTGTGTTCATCATCGGTGCCACCAATCGACCAGACATTATAGATCCTGCACTTCTGCGACCTGGTCGTCTAGACCAAGCTTTAACCAAGTACACTCAAGGATTTAGTGGTGCTGATATTACTGAGATTTGCCAGCGTGCATGCAAGTATGCTATAAGAGAGGACATTGAGAAGGACAATGAAAGAGAAAGGCGAAGAAGCGAGAATCCTGAGGTCATGGAGGAGGATGGCGAAGAAGCGAGAATCCTGAGGTTCGCAGATTCCAACTCAAGTGATGATGCTGCCTCAATAGATCCGTTTGCAACCACTGTTGGATTCGATGACAATGATCTTTACAGTTATTAG 3303 0.416 MSSQSCKQLKTIPKPEPTSSSASIVADNDDLLFEILLRLPIPSLLKFKSVSKHWLSLISNPQFSRRRIPFLIFPTCSISRKFPRYNFVDFNPNPLNPNPNPNPNPINIAPFPGPFEKLAYIKSAISVDVLQSCNGLVLCRSDYRVEIHYYVCNPTTKQYSVLPPLKKCSGLLNFVSGVCLAFDPSKSPHYKVVCVRFCGLSYQYHYQIEIYSSENGLWRVSNCSFTGCGSVDFHRCVFWNGALHWLSIWGSPLLYFNVDEEEVKDMPMPSMVHHDDDDWDQTHQRQIEYFGESRDHLHLIEIYGRKTLEFNVYEMKRDYSGWFVKYHVDLNAVSIAFPEMILEDLSPNDWDYYRFDVVSVITAEPIENSFLVLKIYGKFVRYNFEDKSFHKLHEIPVPDSLLVSCGSFGMANKALSSESTILENKKAPNRLVVDEATNDDNSVVTLNPETMEKLQLLHGDIILIKGKKRKDTICIAVADETCEKPKIRMNKVIRNNLRVRLGDVVSVHECANFQYGKRVHILPLDDTIEGVTGNLFDAYLKPYFLDGYRPMRKGDLFLVRGGMRSVEFKVIETDPSEYCVVTPDTKIFFEGEPVRREDQTRLDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTTIARAIANETGAFFLCINGPEIMSKLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDTYIGVPDEGGRLEVLHIHTKNMKLANDVDLENISKNSHGYVGADLAALCTEAALQCIREKMDVIDLEDETIDAEILNSMVVRNEHFQTALGSSNPSALRETFVEVPNVSWDHIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIASECQANFISVKGPELLTMWFGESEANVREIFDKARASAPCVLFFDELDSIAIQRGSHIGDAGGSADRVLNQLLTEMDGMSVNKTVFIIGATNRPDIIDPALLRPGRLDQALTKYTQGFSGADITEICQRACKYAIREDIEKDNERERRRSENPEVMEEDGEEARILRFADSNSSDDAASIDPFATTVGFDDNDLYSY 1100
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto10g0771 1100 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 843 1049 IPR027417 -
Sto10g0771 1100 Gene3D - 835 1011 IPR027417 -
Sto10g0771 1100 Gene3D - 743 834 - -
Sto10g0771 1100 SMART fbox_2 29 67 IPR001810 GO:0005515
Sto10g0771 1100 SMART AAA_5 881 1020 IPR003593 -
Sto10g0771 1100 SMART AAA_5 641 755 IPR003593 -
Sto10g0771 1100 ProSitePatterns AAA-protein family signature. 988 1006 IPR003960 GO:0005524|GO:0016887
Sto10g0771 1100 PANTHER CELL DIVISION CYCLE PROTEIN 48 HOMOLOG 1013 1054 - -
Sto10g0771 1100 PANTHER CELL DIVISION CYCLE PROTEIN 48 HOMOLOG 740 1013 - -
Sto10g0771 1100 PANTHER CELL DIVISION CYCLE PROTEIN 48 HOMOLOG 419 738 - -
Sto10g0771 1100 SUPERFAMILY Cdc48 domain 2-like 512 604 IPR029067 -
Sto10g0771 1100 MobiDBLite consensus disorder prediction 1045 1085 - -
Sto10g0771 1100 MobiDBLite consensus disorder prediction 1045 1072 - -
Sto10g0771 1100 SUPERFAMILY F-box domain 29 108 IPR036047 GO:0005515
Sto10g0771 1100 SMART CDC48_2_2 530 596 IPR004201 -
Sto10g0771 1100 Pfam AAA+ lid domain 764 806 IPR041569 -
Sto10g0771 1100 Pfam AAA+ lid domain 1014 1046 IPR041569 -
Sto10g0771 1100 Gene3D - 1012 1082 - -
Sto10g0771 1100 MobiDBLite consensus disorder prediction 1 22 - -
Sto10g0771 1100 Gene3D - 410 512 - -
Sto10g0771 1100 CDD AAA 611 749 - -
Sto10g0771 1100 Pfam Cell division protein 48 (CDC48), domain 2 532 595 IPR004201 -
Sto10g0771 1100 Gene3D - 513 591 - -
Sto10g0771 1100 SMART CDC48_N_2 430 513 IPR003338 -
Sto10g0771 1100 Gene3D - 28 63 - -
Sto10g0771 1100 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 604 833 IPR027417 -
Sto10g0771 1100 Pfam F-box domain 29 63 IPR001810 GO:0005515
Sto10g0771 1100 Pfam Cell division protein 48 (CDC48), N-terminal domain 430 510 IPR003338 -
Sto10g0771 1100 Gene3D - 592 740 IPR027417 -
Sto10g0771 1100 PANTHER AAA-FAMILY ATPASE 1013 1054 - -
Sto10g0771 1100 PANTHER AAA-FAMILY ATPASE 419 738 - -
Sto10g0771 1100 PANTHER AAA-FAMILY ATPASE 740 1013 - -
Sto10g0771 1100 CDD AAA 851 1012 - -
Sto10g0771 1100 TIGRFAM F_box_assoc_1: F-box protein interaction domain 131 272 IPR017451 -
Sto10g0771 1100 SUPERFAMILY ADC-like 427 510 IPR009010 -
Sto10g0771 1100 Pfam ATPase family associated with various cellular activities (AAA) 885 1013 IPR003959 GO:0005524|GO:0016887
Sto10g0771 1100 Pfam ATPase family associated with various cellular activities (AAA) 645 739 IPR003959 GO:0005524|GO:0016887
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto10g0771 Sto-Chr10 7076107 7085759 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto10g0771 596 812 Calmodulin-binding Proteins AT3G56690 36.111 2.00e-41 163
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto10g0771 K13525 - jre:108990908 1135.94