Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto10g0753 ATGGAATTGGAAAGAAAAGTCAAATTTGCCCTTTCATTTTGGAGAGAAAGTGAGGAGAACGTGCCTCTGCTTCAAGAGAAGGTGAAGGAAGAAGCGACGGTGGTGGCTGCGACGATGGCAGAGTCTgaggtggcggtggtggtgaaATCGAGGTTGAGGGAGCTTCGAGAGAGCTGCATATGGAGAAacaaagaacaaaacaaaaagAAATCGGTATGGATACGAAGGCTATTAGTAGAAGAGAGACTTACTACGGGGAAACCTGTGCTTATTGGCTTGCTGGGCGATGTACTAGAAACCCTTTCCCATTACTCGGTTGAGAAGACTCCTGAAGATGATTCAAATAATTTAGTAAATAAGAAGAGTGGAGATGGGCCAAGCACCAGAAAGGGTACTCAAAAGTCATCACGGAGTGTCTGTAAATATTGGATGAATGGAAATTGCACTCATGGTGATCGGTGCTGGAACTTTCATTCGTGGTTTCAGGGCAATGGGCTTTCAGTGGTGGCTAAGCTACATGAACACAAAAAGATTGTCACTGGGATTGTGCTTCCAGTTGGATCAGACAAACTATTTTCTGGCAGCACTGATGGAACAGTTCGGATATGGGATTGCCACACTGGCCAATGCGTTAGTGTGATAAATCTTGGTGGTGAAGTAAGGTCTTTGATCTGTGAGGGTACATGGGTTTTTGCTGGCATGCCGAATGCTGTTAAGGCTTGGAACATTCAGACAGCTGCTGAGTTTACTCTTGACGGGCCCAAGGGACAAGTACTTGCCATGGCTGTTGGCAATGATACTCTTTTTGCGGGAGCAAAGGACGGTGTTATATATGCATGGAGAGGTAGTTCTGAAACGAAGTGTCCATTTGAACCAGTGGCAGCATTGAATGGCCACACTAAAGCCATAGTTTGCCTAACTGTTGGACTTGGAATTGGAGGCAAGATGTTATACTCAGGTTCTATGGACCGTAGCATCAAGGTTTGGGACCTCAACACATTACTGTGTACAATGACTCTGAACGCCCACACTGATGTAGTGACATCCCTTGTTTGTTGGTATCAATATTTGATGTCAAGTTCATCGGATGGCACAATTAAGATTTGGGCTGCCACTGAAGCAGGAACTTTGGAAGTAGTATATACACACCGTGAAGAACATGGTGTTGTTGCTCTTAGCGGAATGACTGATGTAGAAGGAAAACACATTCTGTTTTGCTCGTGCAATAACCATTCGGTTAGCTTATACGAATTGCCGACATTTTCTCGGAGAGGACAATTATTCTCAAAACAAGAAGTTCGAGCAATTGAATTAGGTCCTAGTGGACTCTTTTTCACTGGAGATGGAACTGGTTTGATGACTGTTTGGAAATGGTTATAA 1380 0.429 MELERKVKFALSFWRESEENVPLLQEKVKEEATVVAATMAESEVAVVVKSRLRELRESCIWRNKEQNKKKSVWIRRLLVEERLTTGKPVLIGLLGDVLETLSHYSVEKTPEDDSNNLVNKKSGDGPSTRKGTQKSSRSVCKYWMNGNCTHGDRCWNFHSWFQGNGLSVVAKLHEHKKIVTGIVLPVGSDKLFSGSTDGTVRIWDCHTGQCVSVINLGGEVRSLICEGTWVFAGMPNAVKAWNIQTAAEFTLDGPKGQVLAMAVGNDTLFAGAKDGVIYAWRGSSETKCPFEPVAALNGHTKAIVCLTVGLGIGGKMLYSGSMDRSIKVWDLNTLLCTMTLNAHTDVVTSLVCWYQYLMSSSSDGTIKIWAATEAGTLEVVYTHREEHGVVALSGMTDVEGKHILFCSCNNHSVSLYELPTFSRRGQLFSKQEVRAIELGPSGLFFTGDGTGLMTVWKWL 459
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto10g0753 459 ProSitePatterns Trp-Asp (WD) repeats signature. 317 331 IPR019775 -
Sto10g0753 459 Gene3D - 153 224 IPR015943 GO:0005515
Sto10g0753 459 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 296 333 - -
Sto10g0753 459 SMART c3hfinal6 135 160 IPR000571 GO:0046872
Sto10g0753 459 ProSiteProfiles Trp-Asp (WD) repeats profile. 172 213 IPR001680 GO:0005515
Sto10g0753 459 MobiDBLite consensus disorder prediction 109 133 - -
Sto10g0753 459 ProSiteProfiles Zinc finger C3H1-type profile. 134 161 IPR000571 GO:0046872
Sto10g0753 459 SMART WD40_4 376 417 IPR001680 GO:0005515
Sto10g0753 459 SMART WD40_4 333 370 IPR001680 GO:0005515
Sto10g0753 459 SMART WD40_4 289 330 IPR001680 GO:0005515
Sto10g0753 459 SMART WD40_4 244 281 IPR001680 GO:0005515
Sto10g0753 459 SMART WD40_4 420 457 IPR001680 GO:0005515
Sto10g0753 459 SMART WD40_4 165 204 IPR001680 GO:0005515
Sto10g0753 459 MobiDBLite consensus disorder prediction 119 133 - -
Sto10g0753 459 SUPERFAMILY WD40 repeat-like 167 457 IPR036322 GO:0005515
Sto10g0753 459 ProSiteProfiles Trp-Asp (WD) repeats profile. 340 379 IPR001680 GO:0005515
Sto10g0753 459 PANTHER - 104 459 IPR044715 -
Sto10g0753 459 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 172 204 - -
Sto10g0753 459 SUPERFAMILY CCCH zinc finger 135 159 IPR036855 GO:0046872
Sto10g0753 459 Gene3D - 225 459 IPR015943 GO:0005515
Sto10g0753 459 PRINTS G protein beta WD-40 repeat signature 191 205 IPR020472 -
Sto10g0753 459 PRINTS G protein beta WD-40 repeat signature 317 331 IPR020472 -
Sto10g0753 459 PRINTS G protein beta WD-40 repeat signature 357 371 IPR020472 -
Sto10g0753 459 Pfam WD domain, G-beta repeat 336 369 IPR001680 GO:0005515
Sto10g0753 459 Pfam WD domain, G-beta repeat 170 204 IPR001680 GO:0005515
Sto10g0753 459 Pfam WD domain, G-beta repeat 291 330 IPR001680 GO:0005515
Sto10g0753 459 ProSiteProfiles Trp-Asp (WD) repeats profile. 296 339 IPR001680 GO:0005515
Sto10g0753 459 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 48-LIKE ISOFORM X1 104 459 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto10g0753 Sto-Chr10 6949821 6958201 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto10g0753 171 380 Acyl Lipid Metabolism Gene Families AT3G18860 26.991 8.83e-10 59.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Sto10g0753 WD40 0.00073 CL0186
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto10g0753 - - gmx:100787799 517.309