Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto10g0661 ATGGTGTCGCTACTTCCATACGGCGATGTAGATTTCAGCTTGAGGGCAATGGCTGGTCGTGCTGAGGGTTTTGGCCGCTTCTCCATCGGAGGTCTCAACGGCCCTCTCTATTTCGTCACCAACCTCGCAGGttttcctcctcttccttcttctagGGATGATGGTCCTGGATCACTACGTGATGGATGTCGTAGAAAGGAGCCACTTTGGATTGTTTTTGAAGTTTCGGGTACAATTCATCTTTCATCATACCTGAGTGTCTCATCTTATAAGACAATAGATGGCCGAGGGCAGAGTGTAAAGCTCACAGGAAAGGGCTTAAGGTTGAAAGAATGTGAGCATATAATTATATGCAACCTTCAGTTTGAGGGTGGTAGGGGTCATGATGTTGATGGCATTCAAATAAAACCAAATTCTAGGCACATATGGATAGATCGTTGCAGTCTTAGTGATTATGATGACGGGCTTATAGACATTACAAGACAAAGCACGGATATTACTGTATCTAGATGTTACTTTGCGCAGCATGACAAGACTATGCTAATTGGAGCTGACCCATCTCACATTGGGGATAGATGCATCAGGGTGACAATTCATCATTGTTTCTTTGATGGCACACGGCAAAGACAACCTCGTGTTAGATTTGGAAAAGTTCACCTGTACAACAATTACACCAGAAACTGGGGTATATATGCTGTTTGTGCTAGTGTTGAGTCCCAGATATACTCTCAGTGCAACATATACGAAGCAGGAAACAAGAAAAAGACTTTTGAATTTTATACAGAGAAGGCTGCGGACAAGGAAGAGCAGAAATCTGGGTTTATAAAATCCGAAGGAGACATATTACTAAATGGTGCACAACCATGCTCGCAGACAGAGCACAGAGAAGGATGCATGTTCCATCCTAGTGAATATTATCCAACTTGGACAATGGAAGCACCTTCACACTCTTTTAAAGATGTTCTCCAATTATGTACAGGTTGGTCATCCATTTCTAGGCCCAAAGACCTTCCTGTTTGTAATTAG 1026 0.4191 MVSLLPYGDVDFSLRAMAGRAEGFGRFSIGGLNGPLYFVTNLAGFPPLPSSRDDGPGSLRDGCRRKEPLWIVFEVSGTIHLSSYLSVSSYKTIDGRGQSVKLTGKGLRLKECEHIIICNLQFEGGRGHDVDGIQIKPNSRHIWIDRCSLSDYDDGLIDITRQSTDITVSRCYFAQHDKTMLIGADPSHIGDRCIRVTIHHCFFDGTRQRQPRVRFGKVHLYNNYTRNWGIYAVCASVESQIYSQCNIYEAGNKKKTFEFYTEKAADKEEQKSGFIKSEGDILLNGAQPCSQTEHREGCMFHPSEYYPTWTMEAPSHSFKDVLQLCTGWSSISRPKDLPVCN 341
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto10g0661 341 PANTHER PECTATE LYASE 18-RELATED 4 335 IPR045032 GO:0030570
Sto10g0661 341 SUPERFAMILY Pectin lyase-like 18 292 IPR011050 -
Sto10g0661 341 Gene3D - 9 321 IPR012334 -
Sto10g0661 341 PRINTS Pollen allergen Amb family signature 20 37 IPR018082 -
Sto10g0661 341 PRINTS Pollen allergen Amb family signature 209 228 IPR018082 -
Sto10g0661 341 PRINTS Pollen allergen Amb family signature 231 250 IPR018082 -
Sto10g0661 341 SMART amb_all 56 254 IPR002022 -
Sto10g0661 341 PANTHER PECTATE LYASE 4 335 - -
Sto10g0661 341 Pfam Pectate lyase 85 247 IPR002022 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto10g0661 Sto-Chr10 5746545 5749485 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto10g0661 53 336 Polysaccharide Lyase AT3G55140 82.042 0.0 508
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto10g0661 K01728 - gmx:100802068 599.356