Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto10g0640 ATGGTTCTGTCTAACAAGAAGCTGAAACAGAAGGTAAGAGCAGAGTTAGCTCAATCTCAGGCCGAAAATGCTGACTTGACTCCACAACCACACGCCTCTCCCAAAAATCTTCTAGATTCTTCCACCTCCAAACTCCGATTATCAAAGAGAGAGAAACGCAGAAAGGTTCGTTCTCTGAACAGGATGCCCAAGAAGaagaaagcCAAAACGGCAGAGAAGAGTGGTGCAAATCCTGGAGATGATAAATTAGAGGCCTCAGAATTAAATCAGAGTAATAGCAGTGAACAAAATGGTGATGATCCTACAAAAGTTTATGTTGGAGGAATTCCTTTTATTCAACCGAGGATGATATTAGAAGCTTATTTTGAAGGCTGTGGCACAATAATTGAAGTTGATGCCATGAAGTTTCCTGAGAGTGGAAAGTTTCGAGGGATTGCCATTATTAGTTTTAAGACTGAAGCTGCTGCAAAACGAGCCTTGGCACTTGATGGATCTGACATggGAGGACTCTTTCTTAAGATCCAACCTTACAAAACAATCCGAATCAAAGCATCTGATTTTACCCCTAAACGAGTGGAGGGCTACAATAGAATATATGTCGGAAATTTACCATGGGATACAACAGAGGATCAATTAAGGAACCTATTATCAAATTGCAGCATATCTTCCATACGTTTTGGTACGGACAAGGGGGgctatgctcatgtggatttcACCGATAGTCAGTCAATGAAAAGGGCACTCACCATGGACCAAAAGATTTTGTGTGGGAGACCTGTTAGGATATCTTGTGCAGTTCCTTTGAAGAAGGCAAAGAGCCATGCAATTGATATGCCTACAGCAACGGAGTTGATGGTGAGAAGTCTAGCTCCATTGGAAGTGGCAAAATGCCTacaagcaatggagttgatggTGAGAAGTCTACCTCCATTGGAAGTGGAAAGATGA 948 0.3977 MVLSNKKLKQKVRAELAQSQAENADLTPQPHASPKNLLDSSTSKLRLSKREKRRKVRSLNRMPKKKKAKTAEKSGANPGDDKLEASELNQSNSSEQNGDDPTKVYVGGIPFIQPRMILEAYFEGCGTIIEVDAMKFPESGKFRGIAIISFKTEAAAKRALALDGSDMGGLFLKIQPYKTIRIKASDFTPKRVEGYNRIYVGNLPWDTTEDQLRNLLSNCSISSIRFGTDKGGYAHVDFTDSQSMKRALTMDQKILCGRPVRISCAVPLKKAKSHAIDMPTATELMVRSLAPLEVAKCLQAMELMVRSLPPLEVER 315
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto10g0640 315 MobiDBLite consensus disorder prediction 84 100 - -
Sto10g0640 315 PANTHER PHRAGMOPLASTIN INTERACTING PROTEIN 1-RELATED 8 285 - -
Sto10g0640 315 Gene3D - 35 184 IPR012677 -
Sto10g0640 315 MobiDBLite consensus disorder prediction 47 68 - -
Sto10g0640 315 SUPERFAMILY RNA-binding domain, RBD 92 179 IPR035979 GO:0003676
Sto10g0640 315 Gene3D - 185 275 IPR012677 -
Sto10g0640 315 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 198 260 IPR000504 GO:0003723
Sto10g0640 315 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 104 170 IPR000504 GO:0003723
Sto10g0640 315 SMART rrm1_1 197 263 IPR000504 GO:0003723
Sto10g0640 315 SMART rrm1_1 103 175 IPR000504 GO:0003723
Sto10g0640 315 MobiDBLite consensus disorder prediction 16 43 - -
Sto10g0640 315 CDD RRM1_PHIP1 104 175 IPR034361 -
Sto10g0640 315 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 196 267 IPR000504 GO:0003723
Sto10g0640 315 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 4B/4H 8 285 - -
Sto10g0640 315 MobiDBLite consensus disorder prediction 1 103 - -
Sto10g0640 315 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 102 179 IPR000504 GO:0003723
Sto10g0640 315 SUPERFAMILY RNA-binding domain, RBD 189 269 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto10g0640 Sto-Chr10 5561023 5565296 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto10g0640 118 248 Eukaryotic Initiation Factors Gene Family AT2G23350 29.496 7.18e-06 45.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto10g0640 - - zju:107413500 291.967