Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto10g0586 ATGTCAGCGCCATTCAACATGATACCTCAGCCCCCTGATCAGTCTGAAAAAGAGAAGGATGCTTTGCAACTATTTTGGACCGAGAAGaagtttgaaattgaaaatgctggagACTTTAAGAGCCAGCCTCATTTGCCTCTGGCGAGGATCAAAAGGAACATGAAAGCCAATGAAGATGTAAAGGTGGTGACTAAAGAAGCACCCGTGGTGATTGCAAAAGCATGTGAGCTATTCATTGAGGAGCTGGCACTTCGGTCATGGATGGTGACCGAAGAAAACAAGAGGCACACTATCCGTCCCTCTGACATCGCTAGGGCAGTTGAGAAAGATGACAACCACACTTATGATTTTCTTAATCCTGTTGTCGCAATTGATCATGATCATAATTGCCCTCTTCATCACCCCCAGGATGCGATGGGAAGAAACAAACAACTTCCTGATCAGCATCACATGATGCCACCAATGGGTCCGATATGCATTCCGATGAGCAAGCATCAAATGGAAGGGTGGCATAGTGGAAACTGCATTTTCTTTCACATTTCCTTCAGTTCTCGCTTTTATGATTCTGTTGTTTGGGAAAACTGTTATGCTTAA 594 0.4276 MSAPFNMIPQPPDQSEKEKDALQLFWTEKKFEIENAGDFKSQPHLPLARIKRNMKANEDVKVVTKEAPVVIAKACELFIEELALRSWMVTEENKRHTIRPSDIARAVEKDDNHTYDFLNPVVAIDHDHNCPLHHPQDAMGRNKQLPDQHHMMPPMGPICIPMSKHQMEGWHSGNCIFFHISFSSRFYDSVVWENCYA 197
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto10g0586 197 PANTHER HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED 14 144 - -
Sto10g0586 197 SUPERFAMILY Histone-fold 43 135 IPR009072 GO:0046982
Sto10g0586 197 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 44 107 IPR003958 -
Sto10g0586 197 Gene3D Histone, subunit A 9 123 IPR009072 GO:0046982
Sto10g0586 197 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-4 14 144 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto10g0586 Sto-Chr10 4950047 4953085 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto10g0586 22 125 CCAAT-HAP5 Transcription Factor Family AT1G56170 52.885 3.12e-31 111
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YC Sto10g0586 CBFD_NFYB_HMF 2.2e-16 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto10g0586 - K08066 sind:105158091 118.627