Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto10g0556 ATGTTGTTTACTATGCAAGTGGTTAACAATCGTGAGACTGGAAGGTCGAGAGGTTTCGGATTCGTGACCTTCTCTTTTGAGCAGGCGATGAGGGATGCGATCGAGGGAATGAACGGTCAAGATCTTGATGGGCGCAATATCACTGTGAACAAGGCTCAGTCCCGTGGTAgaggcggcggcggcggaggaaATGGAAGTGGCGGTGGCGGCGGTGGCTACAGCCGTGCGTGA 231 0.4762 MLFTMQVVNNRETGRSRGFGFVTFSFEQAMRDAIEGMNGQDLDGRNITVNKAQSRGRGGGGGGNGSGGGGGGYSRA 76
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto10g0556 76 PANTHER GEO13361P1-RELATED 5 74 - -
Sto10g0556 76 MobiDBLite consensus disorder prediction 38 76 - -
Sto10g0556 76 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 1 54 IPR000504 GO:0003723
Sto10g0556 76 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 6 47 IPR000504 GO:0003723
Sto10g0556 76 PANTHER RNA-BINDING PROTEIN GRP1A, PUTATIVE, EXPRESSED-RELATED 5 74 - -
Sto10g0556 76 SUPERFAMILY RNA-binding domain, RBD 6 74 IPR035979 GO:0003676
Sto10g0556 76 Gene3D - 4 76 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto10g0556 Sto-Chr10 4704748 4704978 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto10g0556 4 55 Eukaryotic Initiation Factors Gene Family AT1G34140 42.308 4.96e-06 40.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto10g0556 - K13195 jre:109016932 88.9669