Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto10g0550 ATGTACACTTCAAGAAAGAAGATCCACAAGGATAAGGATGCTGAGCCCACTGAATTTGAGGAGACAGTGGCACAGTACCTTTTTGATTTGGAGAACACTAACCAGGAGCTGAAAAGTGACCTGAAAGATCTATACATTAATCAAGCAGTTCAAATGGATGTTGCTGGGAACCGCAAAGCTGTAGTTATCTATGTACCTTACAGATTGAGGAAGGCTTTCCGCAAAATCCATCTTAGACTTGTCAGAGAGTTGGAGAAGAAATTCAGTGGAAAGGATGTTGTCATGATTGCTACAAGAAGGATCGTGCGACCACCAAAGAAAGGTTCCGCTGTTCAGCGACCTCGTACCCGGACATTAACAGCTGTCCATGATGCCATGCTGGAGGATGTTGTGCATCCTGCTGAGATTGTTGGCAAACGTGTCAGATATAGATTGGATGGATCAAAAATAATGAAGgtATTCTTGGACCCTAAGGAGCGCAATAACACTGAATACAAGCTAGATACCTTTTCTGGAGTTTACAGGAAGCTTACCGGGAAAGACGTAACATTTGAGTTTCCAATCACTGAAGCctaa 576 0.4271 MYTSRKKIHKDKDAEPTEFEETVAQYLFDLENTNQELKSDLKDLYINQAVQMDVAGNRKAVVIYVPYRLRKAFRKIHLRLVRELEKKFSGKDVVMIATRRIVRPPKKGSAVQRPRTRTLTAVHDAMLEDVVHPAEIVGKRVRYRLDGSKIMKVFLDPKERNNTEYKLDTFSGVYRKLTGKDVTFEFPITEA 191
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto10g0550 191 ProSitePatterns Ribosomal protein S7e signature. 79 92 IPR000554 GO:0003735|GO:0005840|GO:0006412
Sto10g0550 191 Coils Coil 27 47 - -
Sto10g0550 191 PANTHER 40S RIBOSOMAL PROTEIN S7 2 191 - -
Sto10g0550 191 PANTHER 40S RIBOSOMAL PROTEIN S7 2 191 IPR000554 GO:0003735|GO:0005840|GO:0006412
Sto10g0550 191 Pfam Ribosomal protein S7e 7 186 IPR000554 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto10g0550 Sto-Chr10 4600925 4602115 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto10g0550 1 191 Cytoplasmic Ribosomal Protein Gene Family AT3G02560 81.152 1.30e-116 327
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto10g0550 10 4600925 4602115 Sto10g0550 10 4600925 4602115 ECH
Sto8g2167 8 14239230 14241705 Sto10g0550 10 4600925 4602115 ECH