Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto10g0496 ATGGACAAAATCAACCCTAATGAAGAACATGGtgaagcttcttcttcttctgtcaAAGCCAAGATCATGGCTCATCCTCACTACCATCGTCTCTTGGCTGCCTACGTCAATTGTCAAaagGTTGGGGCGCCGGCGGAAGCGTTCATGGAGGCATATTGTGAGATGCTGACAAAGTATGAGGAAGAGCTTTCAAAACCCTTCAAGGAAGCCATGCACTTCCTTCATTCCATTGAATCTCAGTTCAAAGCTCtcactctttcttcttcttcttctcactttGCTTGTGGGGAGGCAACCGAGGTCGACCGGAACGTGTCGTCGGACGAAGATGCCGATGTGGCGAATGACGACGTGATAGATCCGCTGGCGGAGGACCGAGAATTGAAGGGACAACTTCTGCGTAAGTACAGCGGATACCTAGGCAGTCTGAAGCAAGAATTcatgaagaagaggaagaaagggaaGCTTCCTAAAGAAGCAAGGCAACAGCTTCTTGATTGGTGGAGCAAACATTATAAATGGCCTTACCCATCTGAGTCACAGAAGGTGGCACTAGCAGAATCAACAGGATTGGATCAGAAGCAAATAAACAATTGGTTCATAAATCAAAGGAAACGTCATTGGAAGCCATCAGAGGATATGCAGTTCATGGTCATGGATCCATCTCATCCTCATCATCACTATTACATCGATGCTGTTCTTGCCAATCCCTATCCAATGAATatctaa 729 0.4156 MDKINPNEEHGEASSSSVKAKIMAHPHYHRLLAAYVNCQKVGAPAEAFMEAYCEMLTKYEEELSKPFKEAMHFLHSIESQFKALTLSSSSSHFACGEATEVDRNVSSDEDADVANDDVIDPLAEDRELKGQLLRKYSGYLGSLKQEFMKKRKKGKLPKEARQQLLDWWSKHYKWPYPSESQKVALAESTGLDQKQINNWFINQRKRHWKPSEDMQFMVMDPSHPHHHYYIDAVLANPYPMNI 242
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto10g0496 242 Pfam KNOX2 domain 48 85 IPR005541 GO:0003677|GO:0005634
Sto10g0496 242 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 14 46 - -
Sto10g0496 242 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 47 235 - -
Sto10g0496 242 Pfam KNOX1 domain 18 46 IPR005540 GO:0003677|GO:0005634
Sto10g0496 242 ProSiteProfiles 'Homeobox' domain profile. 147 210 IPR001356 GO:0003677
Sto10g0496 242 ProSitePatterns 'Homeobox' domain signature. 185 208 IPR017970 GO:0000981|GO:0006355
Sto10g0496 242 SMART KNOX2_2 37 86 IPR005541 GO:0003677|GO:0005634
Sto10g0496 242 ProSiteProfiles ELK domain profile. 127 147 IPR005539 GO:0003677
Sto10g0496 242 SUPERFAMILY Homeodomain-like 149 226 IPR009057 -
Sto10g0496 242 PANTHER - 14 46 - -
Sto10g0496 242 PANTHER - 47 235 - -
Sto10g0496 242 Gene3D - 152 214 - -
Sto10g0496 242 Pfam Homeobox KN domain 167 206 IPR008422 GO:0003677|GO:0006355
Sto10g0496 242 SMART KNOX1_2 16 58 IPR005540 GO:0003677|GO:0005634
Sto10g0496 242 Pfam ELK domain 127 148 IPR005539 GO:0003677
Sto10g0496 242 CDD homeodomain 159 211 IPR001356 GO:0003677
Sto10g0496 242 SMART HOX_1 149 214 IPR001356 GO:0003677
Sto10g0496 242 SMART ELK_2 127 148 IPR005539 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto10g0496 Sto-Chr10 4040387 4045156 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto10g0496 18 241 Homeobox Transcription Factor Family AT1G62360 70.155 3.57e-111 323
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-KNOX Sto10g0496 Homeobox_KN 1.9e-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto10g0496 - - tcc:18597223 374.785