Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto10g0494 ATGGCGAAAACTAGACCTGGAAGAAAAGACCTCGATTCATATACCATCAGAGGGACCAACAAGATCGTAAGAGCTGGAGACTGCGTGTTGATGCGACCTTCCGATACAAGCAAGCCTCCGTATGTGGCGCGAGTGGAGAAGATCGAACAGGACAATAGGAACAATGTTAAAGTCCGTGTGAGGTGGTATTATCGGCCCGAAGAGTCGATTGGGGGACGCAGGCAATTCCATGGAGCTAAGGAGCTGTTTTTGTCCGACCATTATGATATTCAGAGTGCTCACACCATTGAAGGGAAGTGTATTGTGCATTCTTTTAAGAACTATACAAAGCTTGAAAATGTAGGGACTGAAGATTACTATTGTAGATTCGAGTACAAGGCTGCTACTGGGGCTTTTACGCCTGACCGAGTGGCTGTGTATTGTAAATGCGAGATGCCTTATAACCCAGATGACCTCATGGTGCAATGTGAAGGGTGCAAGGATTGGTAA 489 0.4622 MAKTRPGRKDLDSYTIRGTNKIVRAGDCVLMRPSDTSKPPYVARVEKIEQDNRNNVKVRVRWYYRPEESIGGRRQFHGAKELFLSDHYDIQSAHTIEGKCIVHSFKNYTKLENVGTEDYYCRFEYKAATGAFTPDRVAVYCKCEMPYNPDDLMVQCEGCKDW 162
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto10g0494 162 SUPERFAMILY FYVE/PHD zinc finger 132 162 IPR011011 -
Sto10g0494 162 PANTHER BNAC03G64850D PROTEIN 3 162 IPR045205 GO:0006325|GO:0035064
Sto10g0494 162 ProSiteProfiles BAH domain profile. 21 136 IPR001025 GO:0003682
Sto10g0494 162 Pfam BAH domain 23 135 IPR001025 GO:0003682
Sto10g0494 162 PANTHER OS08G0421900 PROTEIN 3 162 - -
Sto10g0494 162 Gene3D - 2 134 IPR043151 -
Sto10g0494 162 SMART BAH_4 21 136 IPR001025 GO:0003682
Sto10g0494 162 CDD BAH_BAHCC1 22 156 - -
Sto10g0494 162 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 135 162 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto10g0494 Sto-Chr10 4029612 4030370 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto10g0494 31 132 Core DNA Replication Machinery Family AT4G14700 29.126 1.19e-10 57.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto10g0494 K25868 - gmx:100800993 344.739