Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto10g0456 ATGTCTTGCTCCAATCTCACAATGTTGGTTTCTTCCAAACCTTCTCTCTCCGACACCTCTTCCCTCTCCTTCCGTTCCTCCCTCACTCCCTTCTTCCAACTCCCTTCCCAGAGTCCCTCCTCTTCGTCGCCCTCCAGATCCTCTGTTTCCCCAATCCAGTGCGGCCTCCGTGAGCTCCGAGACCGAATTGACTCCGTCAAGAACACCCAGAAGATCACCGAGGCCATGAAGCTCGTCGCCGCCGCCAAAGTCCGCCGAGCTCAGGAAGCCGTCGTTAACGGCCGGCCATTCTCCGAAACCCTAGTCGAAGTCCTCTACAACATCAACGAGCAGCTCCAAACCGAAGACGTCGACGTCCCTCTCACCAAAGTCCGCCCCGTCAAGAAGGTCGCCCTCGTCGTCTGTACTGGAGATCGAGGTCTCTGCGGTGGATTCAACAACCAGATCATCAAGAAAGCCGAAGCGAGGATCGCGGAGTTGAAGGATCTAGGGCTTGATTATACCGTGATTAGCGTCGGGAAGAAGGGGAATTCGTATTTCCTTCGTCGGCCGTACATTCCCGTCGATAGGTTTCTCGAGCAGGGATCGCTTCCTACCGCGAAGGAAGCACAAGCCATCGCCGATGACGTTTTCTCGCTGTTCATAAGCGAGGAAGTCGATAAGGTGGAGCTATTGTACACGAAATTCGTGTCTCTTGTGAAATCAGATCCCGTGATTCACACGCTGCTTCCTCTTTCCCCCAAGGGGGAAATCTGTGATGTGAATGGGAATTGTGTGGATGCTGCTGAGGATGAGTTCTTTAGATTGACCACAAAGGAAGGGAAATTGACTGTGGAGAGAGATGTTGTGAGGACTCAGACATCGGATTTCTCTCCGATTTTGGAATTCGAGCAGGATCCAGTTCAGATTCTTGATGCATTATTGCCTTTGTACTTGAATTCTCAGATTCTGAGAGCATTGCAGGAATCACTAGCTAGTGAGCTTGCTGCTAGAATGAGTGCTATGAGCAATGCCACTGATAATGCTGTGGAATTGAAGAGGAATTTGTCTAGGGTTTACAATAGGGAACGTCAAGCCAAGATCACCGGCGAAATTCTGGAAATCATCGCCGGCGCCAACGCCCTAGTTTAG 1131 0.5128 MSCSNLTMLVSSKPSLSDTSSLSFRSSLTPFFQLPSQSPSSSSPSRSSVSPIQCGLRELRDRIDSVKNTQKITEAMKLVAAAKVRRAQEAVVNGRPFSETLVEVLYNINEQLQTEDVDVPLTKVRPVKKVALVVCTGDRGLCGGFNNQIIKKAEARIAELKDLGLDYTVISVGKKGNSYFLRRPYIPVDRFLEQGSLPTAKEAQAIADDVFSLFISEEVDKVELLYTKFVSLVKSDPVIHTLLPLSPKGEICDVNGNCVDAAEDEFFRLTTKEGKLTVERDVVRTQTSDFSPILEFEQDPVQILDALLPLYLNSQILRALQESLASELAARMSAMSNATDNAVELKRNLSRVYNRERQAKITGEILEIIAGANALV 376
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto10g0456 376 Gene3D - 122 246 - -
Sto10g0456 376 PRINTS ATP synthase gamma subunit signature 127 146 IPR000131 GO:0015986|GO:0045261|GO:0046933
Sto10g0456 376 PRINTS ATP synthase gamma subunit signature 220 237 IPR000131 GO:0015986|GO:0045261|GO:0046933
Sto10g0456 376 PRINTS ATP synthase gamma subunit signature 322 341 IPR000131 GO:0015986|GO:0045261|GO:0046933
Sto10g0456 376 PRINTS ATP synthase gamma subunit signature 353 374 IPR000131 GO:0015986|GO:0045261|GO:0046933
Sto10g0456 376 Coils Coil 335 355 - -
Sto10g0456 376 Gene3D ATP synthase, gamma subunit, helix hairpin domain 272 375 - -
Sto10g0456 376 Hamap ATP synthase gamma chain [atpG]. 53 375 IPR000131 GO:0015986|GO:0045261|GO:0046933
Sto10g0456 376 TIGRFAM ATPsyn_F1gamma: ATP synthase F1, gamma subunit 55 375 IPR000131 GO:0015986|GO:0045261|GO:0046933
Sto10g0456 376 Pfam ATP synthase 56 375 IPR000131 GO:0015986|GO:0045261|GO:0046933
Sto10g0456 376 SUPERFAMILY ATP synthase (F1-ATPase), gamma subunit 55 375 IPR035968 GO:0015986|GO:0045261|GO:0046933
Sto10g0456 376 CDD F1-ATPase_gamma 56 372 IPR000131 GO:0015986|GO:0045261|GO:0046933
Sto10g0456 376 Gene3D ATP synthase, gamma subunit, helix hairpin domain 55 121 - -
Sto10g0456 376 PANTHER ATP SYNTHASE GAMMA CHAIN 1, CHLOROPLASTIC 1 376 - -
Sto10g0456 376 PANTHER ATP SYNTHASE GAMMA CHAIN 1 376 IPR000131 GO:0015986|GO:0045261|GO:0046933
Sto10g0456 376 ProSitePatterns ATP synthase gamma subunit signature. 361 374 IPR023632 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto10g0456 Sto-Chr10 3708512 3709642 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto10g0456 24 375 Primary Pumps ATPases AT1G15700 69.916 4.42e-178 498
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto10g0456 K02115 - nnu:104610940 607.831
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto10g0456 10 3708512 3709642 Sto10g0456 10 3708512 3709642 ECH