Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto10g0440 ATGATGCAGCCTGGACCTGGCATGGCTCCCCCAAACATGGGTCAACAACCTAACCAGCAATACCAGCAGCAGCAGCCCTACATGATGATGCCGCCGCAGGCTCAGGCGCCGCCGATGTGGGCTCCATCAGCCCAGCCCCCGCCACAGCAGTCGGTGGCTCCGCCTCAACAGACCCAGCACGTCCAGCCGACGAGCGCCGATGAGGTCCGTACGCTTTGGATCGGTGATTTGCAGTACTGGATGGACGAGAACTATCTTTATACTTGTTTCGCACATACCGGCGAGGTGGCCTCTGTGAAAGTCATACGCAATAAGCAAACTAATCAACCGGAAGGTTATGGGTTTATTGAGTTTTTCACTCGTGCTGCTGCAGAGAGAATACTGCAGACATATAACGGTACAATTATGCCAAATGGTGGGCAAAGTTTCAGATTGAATTGGGCAACCTTTAGTGCGGGTGAAAGGCGTCATGATGATAGCCCAGATTACACAATTTTTGTTGGTGACTTGGCAGCAGATGTTACAGATTACATGCTGCAGGAGACATTTAGGTCCCGATATTCCTCAGTTAAGGGTGCAAAAGTTGTGATTGATAGGCTCACTGGGCGGACAAAGGGTTATGGTTTTGTTAAGTTTGGAGATGAGAGTGAACAAATGCAAGCTATGACTGAGATGCAAGGGGTTCTTTGTTCTACAAGACCCATGCGAATTGGACCAGCAACAAACAAAAACCTTGGAGGTCAGCAAAAAGCTTCATATCAGAATCCTCAAGGGTCACAGAACGAGAATGATCCAAATAATACAACTATTTTTGTAGGAAATTTGGATCCTAATGTCACAGACGATCACCTGAGGCAAGTTTTTGGCCAGTACGGGGagttgatacatgtgaaaattCCAGCAGGCAAGAGATGTGGATTTGTCCAATTCGCCGACAGGAGCTGTGCAGAAGAGGCTCTGCGGATGTTAAATGGAACGCTCTTGGGTGGACAAAATGTCCGTCTTTCATGGGGCCGTAGTCCTTCAAACAAACAGACACAGGCAGATGCAAACCAGTACGGCGGCAGTGGATATTACGGATATGCTCAGGGGTATGAAAATTATGGATATCCTCCGGCTGCTTCGCAGGATCCCAACATGTATGGCAGCTATCCAGGATCGACTTTTAAGCCTTCTGATCCAATTACAATGATGATTCAAGCATTGTCTGAACCAATCTCATCAGGCTTCACTGGATTTGCAGAAGATTCATTGGAGTTTGATCCTGCGACAGGAAGATTAGAAGCATCATTACTTGAGGGCATGAATTTGGGCTCACCAGATGCAGGAGCTTGGGCTTCCCCAACTTCAGAGGGCATAGATTCAGGCTCAGTAGCTGCAGGTGCTGGGTTGAGTTCGACCATTTTCCCAGAGTCTTCTGTTGATCCCCCTCCAACAGCACTGGATTCTATCACCTATTTTGGAAGAAAAAATGGCTCCACGCATTTTGTTGCTCCTGTTCCATCAGAACTTTGTTCTTTAACTTCTCCGGAGTCATCAGACTTGATGGATTCTTCTAATGTTGGCTCAGAGTCTTCTGCTGCTCTTCCTCCATCAGCACTGGCTTCCACTACCTCCTGTTGTCCAGTTGTGAACTCCTCATCagggaaaagagattttggctgCAAGTCTTTTGCTGATCCTCCTTCATTGATTTCGCTTAATTTTCTTGAGACATCAAGTTCATGTGATGTTTCATCCTTTTTGTCAGGAGAAAATGTGATGGGAGAACGGAGCTCAGTTGGAAAAACTTGA 1794 0.4632 MMQPGPGMAPPNMGQQPNQQYQQQQPYMMMPPQAQAPPMWAPSAQPPPQQSVAPPQQTQHVQPTSADEVRTLWIGDLQYWMDENYLYTCFAHTGEVASVKVIRNKQTNQPEGYGFIEFFTRAAAERILQTYNGTIMPNGGQSFRLNWATFSAGERRHDDSPDYTIFVGDLAADVTDYMLQETFRSRYSSVKGAKVVIDRLTGRTKGYGFVKFGDESEQMQAMTEMQGVLCSTRPMRIGPATNKNLGGQQKASYQNPQGSQNENDPNNTTIFVGNLDPNVTDDHLRQVFGQYGELIHVKIPAGKRCGFVQFADRSCAEEALRMLNGTLLGGQNVRLSWGRSPSNKQTQADANQYGGSGYYGYAQGYENYGYPPAASQDPNMYGSYPGSTFKPSDPITMMIQALSEPISSGFTGFAEDSLEFDPATGRLEASLLEGMNLGSPDAGAWASPTSEGIDSGSVAAGAGLSSTIFPESSVDPPPTALDSITYFGRKNGSTHFVAPVPSELCSLTSPESSDLMDSSNVGSESSAALPPSALASTTSCCPVVNSSSGKRDFGCKSFADPPSLISLNFLETSSSCDVSSFLSGENVMGERSSVGKT 597
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto10g0440 597 CDD RRM1_SECp43_like 71 151 - -
Sto10g0440 597 Gene3D - 162 238 IPR012677 -
Sto10g0440 597 Gene3D - 8 158 IPR012677 -
Sto10g0440 597 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 17 387 - -
Sto10g0440 597 SUPERFAMILY RNA-binding domain, RBD 41 151 IPR035979 GO:0003676
Sto10g0440 597 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 268 340 IPR000504 GO:0003723
Sto10g0440 597 MobiDBLite consensus disorder prediction 242 268 - -
Sto10g0440 597 MobiDBLite consensus disorder prediction 1 65 - -
Sto10g0440 597 CDD RRM3_NGR1_NAM8_like 267 338 - -
Sto10g0440 597 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 70 150 IPR000504 GO:0003723
Sto10g0440 597 SUPERFAMILY RNA-binding domain, RBD 157 255 IPR035979 GO:0003676
Sto10g0440 597 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 165 228 IPR000504 GO:0003723
Sto10g0440 597 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 72 137 IPR000504 GO:0003723
Sto10g0440 597 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 270 333 IPR000504 GO:0003723
Sto10g0440 597 Gene3D - 247 371 IPR012677 -
Sto10g0440 597 SUPERFAMILY RNA-binding domain, RBD 253 364 IPR035979 GO:0003676
Sto10g0440 597 MobiDBLite consensus disorder prediction 238 268 - -
Sto10g0440 597 MobiDBLite consensus disorder prediction 12 30 - -
Sto10g0440 597 CDD RRM2_SECp43_like 162 241 - -
Sto10g0440 597 MobiDBLite consensus disorder prediction 508 527 - -
Sto10g0440 597 PANTHER POLYADENYLATE-BINDING PROTEIN RBP45B 17 387 - -
Sto10g0440 597 SMART rrm1_1 71 146 IPR000504 GO:0003723
Sto10g0440 597 SMART rrm1_1 164 238 IPR000504 GO:0003723
Sto10g0440 597 SMART rrm1_1 269 336 IPR000504 GO:0003723
Sto10g0440 597 MobiDBLite consensus disorder prediction 31 53 - -
Sto10g0440 597 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 163 242 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto10g0440 Sto-Chr10 3525179 3534336 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto10g0440 72 350 Eukaryotic Initiation Factors Gene Family AT4G34110 24.476 3.83e-21 95.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto10g0440 - - aprc:113864230 611.298
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto10g0440 10 3525179 3534336 Sto10g0440 10 3525179 3534336 ECH