Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto10g0430 ATGGACTCGCAAAGGTTGCTACTTTCCCGTGAAAACCCTAGGCCCCTGGCTTTCCCTACTGGGCGAGGAGTACTCCCTTCCGCCACTTCAAAATCCATGCCCAATGAGATCGCCCAGAAGCCTCTCGCTCCTTCCATATCGGATCGATTCAAGGCTATGCTCAAGCAACGAGATGATGAACGGAGGGCTTCGCCCGACGATGATGTGCCACCGCCGTCCACCGGAGAGATTGTGCAGCTTTACGAGATAGTATTGTCGGAGCTTACTTTAAATTTGAAGCCCATCATCACCGAACTTACCATCATTGCAGGAGACCAGAGGGAGCATGGCAAGGGTATCGCCGATGCAATTTGCAACCGGATTATCGAGGTGTCTGTGGAGCAAAAGCTTCCTTCTCTTTATCTTTTGGACAGTATTGTGAAGAATATTGGTGGGGAGTATGTTAGATACTTTTCTTCGCGTCTTCCTGAAGTTTTCTGCGAGGCGTACAGGCAAGTTCAGCCTAATTTACATAATGCTATGCGCCATCTGTTTGGCACTTGGTCAGCTGTCTTTCCACCCTCTGTGCTTCGTAAGATTGAAGTTCAGCTGCAATTTTCTCAAGCTGTTAATAATCAGAATCAATCATCCAGCATTAATCCCCCAAGGGGATCAGAAGCTATGCGACGAACTCATGGCATTCATGTTAATCCAAAATACTTGCGGCAGTTGGAAAACTCCACTATGGATACTGATGGAGGTGAAATGTTGGACTCAACAGGCAGCATTGGTCATACAAATTTTGGCCTTGGAGCAAATAAGATGCATCAAGCTTTAATTAGCCGGCATGGAAGAGTTCCTTCACCTTCTGGAATTGGACTTGATAGGCCTCTGTCAGCATCTGTGGAGGAATATGCAGTTGACAATCCTATTGGCAGGATAGTTGAGAGGGAGTCACCGTCTCATCCTGCATTTAATTATGGATTAGGTAAATCAATTGCTAGAGATGAAGAGCTGATTGATTGGCCACGAAAACAGTATTCTGCTGATGTTCGGAGTCAATTTCCATTTCCTACAAATGGACATCAACGCCAAAATCCAAGAGCTCTAATTGATGCCTATGGCAGTGACAAAAGCACAGTAAATTCAAGCAATAAGCCGTTGGTTGAACTGCTTGATATGAATGGCATAGACAACAAGGTGGTGTCAACATCTTGGCAGAACACTGAAGAGGAGGAGTTTAATTGGGAAGATATGAGTCCAACATTAGCAGACCATAGGAGAAATAATGGTATCTTGCCATCGTCACTTATTTTATCCAGGGAAAGACCTTCTGGCATTGTTGCAGCTACTAATGCAGCTGCTTTGGGGCAAGATACGCGGAGTGGTTGGTCCAGTCGATCGCAGCTTCCTCCATTGGATGATTCTTCTGTTATAGCAGAAGATGCATTTGTCCCATTGGGTTATGGTCGCGGATCATTGGGTCAGGTATCTGGATTACAGAATCAGTTAAATCAAAGTCTAATTCATCGTCAACCTCATGATGTCTGGAAGATTTCACATCATTCATCTAATTCTTCACAACACCTCATTAATGTCAGAGGTCGAGTTAGGAATATCCATCTGTCTCCTGTTGATGGCATTCCAAACACAGAAGTAAACCCTTTTGGGCTTGATGCTCGTCCACCAGCTTTGCCAGCATCTTTTAGAACAAGGCCCCCTGTAAATGTGCATGCTACTCGTCCACCCTCCTTAAATCCTATTTTTCCATTGCAAAAACATGTTAGGAGTCAGTTTGATCCCATAAATGCTAGTAACACCATTGCAAATCAAGGTCCAAATAAATCTTCATTGATGCCTGAACGGCTGTTGGATAGTGTTGAGAATGATAATAAGAGTAAAGTAAAGATGGTTCAGATTCCTCATCAGCTATCTGGGCCAATttcatcaaaccagcaaaaccGTGGACAAGCACCTCAGCCTCAAAATTTTCCATCCCAGGATGTGCTTGAATCACAAGCTCCAGCAGCATCTCAATTTAGATCTGGGAGCTCTCTGCAAGGACATGGAACCATGTCAAATTTGTTACCTGTTGGACAACTTCCTTTGTCAGTCCAAAATATAGCAAACAACTCTCTTCATTTACAGGGGGGAGCTTTGCCCCCTTTATTTCCAGGTGCTCCTACTGCTCCATCACAAATGATGCCTCACACAAATGCTAGTCCATATGTGTCAAGCCAACGGCCAGCTGGTGCATTTTCTGGTTTGATCAATTCACTTATGGCCCAAGGTTTGATCTCATTGTCTGAACAATCCCCTGCACAGGATTCTGTTGGAACTGAGTTTAATCCAGATGTTCTAAAGATTCGTCACGAGTCTTCAATTAGTGCTTTATATGGTGAACTCCCTAGACAATGCACAACTTGTGGCCTCCGATTTAAGTGTCAAGAAGAGCACAGTAGTCATATGGATTGGCATGTGACTAAGAACCGGATGTCTAAAAATCGTAAGCAAAAGCCTTCCCGTAAGTGGTTTGTGAGTGAGAGAATGTGGCTTAGTGGTGCAGAGGCATTAGGAACAGAATCTGTTCCTGGTTTTTTGCCAATTGAGACTGTAGAGGAAAAGAAAGATGATGAAGAGTTGGCCGTGCCGGCTGATGAAGACCAGAATGCATGTGCATTATGTGGAGAGCCTTTTGATGAGTTCTACAGTGATGAAACTGAGGAATGGATGTATAAAGGAGCTGTATACTTAAACGCACCAAAGGGGACAGCAGCAGGCATGGACAGATCACAGTTCGGTCCCATTGTTCATGCTAAATGCAGAACTGAGTCTAGTGCGGCCCCCTCTGAAGAATTTGGACAGGATGATGGGGGTACCATTGAAGAAGGTAGTCAAAGAAAACGAATGCGGAGTTAA 2898 0.442 MDSQRLLLSRENPRPLAFPTGRGVLPSATSKSMPNEIAQKPLAPSISDRFKAMLKQRDDERRASPDDDVPPPSTGEIVQLYEIVLSELTLNLKPIITELTIIAGDQREHGKGIADAICNRIIEVSVEQKLPSLYLLDSIVKNIGGEYVRYFSSRLPEVFCEAYRQVQPNLHNAMRHLFGTWSAVFPPSVLRKIEVQLQFSQAVNNQNQSSSINPPRGSEAMRRTHGIHVNPKYLRQLENSTMDTDGGEMLDSTGSIGHTNFGLGANKMHQALISRHGRVPSPSGIGLDRPLSASVEEYAVDNPIGRIVERESPSHPAFNYGLGKSIARDEELIDWPRKQYSADVRSQFPFPTNGHQRQNPRALIDAYGSDKSTVNSSNKPLVELLDMNGIDNKVVSTSWQNTEEEEFNWEDMSPTLADHRRNNGILPSSLILSRERPSGIVAATNAAALGQDTRSGWSSRSQLPPLDDSSVIAEDAFVPLGYGRGSLGQVSGLQNQLNQSLIHRQPHDVWKISHHSSNSSQHLINVRGRVRNIHLSPVDGIPNTEVNPFGLDARPPALPASFRTRPPVNVHATRPPSLNPIFPLQKHVRSQFDPINASNTIANQGPNKSSLMPERLLDSVENDNKSKVKMVQIPHQLSGPISSNQQNRGQAPQPQNFPSQDVLESQAPAASQFRSGSSLQGHGTMSNLLPVGQLPLSVQNIANNSLHLQGGALPPLFPGAPTAPSQMMPHTNASPYVSSQRPAGAFSGLINSLMAQGLISLSEQSPAQDSVGTEFNPDVLKIRHESSISALYGELPRQCTTCGLRFKCQEEHSSHMDWHVTKNRMSKNRKQKPSRKWFVSERMWLSGAEALGTESVPGFLPIETVEEKKDDEELAVPADEDQNACALCGEPFDEFYSDETEEWMYKGAVYLNAPKGTAAGMDRSQFGPIVHAKCRTESSAAPSEEFGQDDGGTIEEGSQRKRMRS 965
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto10g0430 965 ProSitePatterns Zinc finger C2H2 type domain signature. 799 819 IPR013087 -
Sto10g0430 965 ProSiteProfiles CID domain profile. 73 201 IPR006569 -
Sto10g0430 965 SUPERFAMILY ENTH/VHS domain 73 198 IPR008942 -
Sto10g0430 965 PANTHER POLYADENYLATION AND CLEAVAGE FACTOR HOMOLOG 4 39 940 - -
Sto10g0430 965 MobiDBLite consensus disorder prediction 1 74 - -
Sto10g0430 965 PANTHER PRE-MRNA CLEAVAGE COMPLEX II 39 940 IPR045154 GO:0000993|GO:0003729|GO:0006369|GO:0006378|GO:0006379
Sto10g0430 965 MobiDBLite consensus disorder prediction 51 67 - -
Sto10g0430 965 SMART 558neu5 76 198 IPR006569 -
Sto10g0430 965 Gene3D - 71 198 IPR008942 -
Sto10g0430 965 CDD CID_Pcf11 78 198 - -
Sto10g0430 965 Pfam CID domain 93 192 IPR006569 -
Sto10g0430 965 MobiDBLite consensus disorder prediction 935 965 - -
Sto10g0430 965 MobiDBLite consensus disorder prediction 638 681 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto10g0430 Sto-Chr10 3459723 3466767 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto10g0430 705 965 C2H2 Transcription Factor Family AT4G04885 67.557 9.45e-111 359
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto10g0430 K14400 - gmx:100794796 1212.59