Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto10g0420 ATGCAGATCTTCGTCAAGACCCTCACTGGCAAGACCATCACCCTTGAGGTCGAGAGCTCTGACACCATCGACAACGTCAAGGCCAAGATCCAAGACAAGGAGGGCATTCCCCCAGACCAGCAGAGATTGATCTTCGCTGGAAAGCAGCTCGAGGACGGCCGAACCCTTGCCGATTACAACATCCAGAAGGAATCCACCCTCCACTTGGTGCTCCGTCTCCGTGGTGGCATGCAGATTTTCGTCAAGACCCTCACTGGAAAGACCATCACCCTGGAGGTCGAGAGCTCTGACACCATCGACAACGTCAAGGCCAAGATCCAAGACAAGGAGGGCATTCCCCCAGACCAGCAGAGATTGATCTTCGCTGGAAAGCAGCTTGAAGACGGCCGTACCCTTGCTGACTACAACATCCAGAAGGAATCCACACTCCACCTTGTCCTGCGTCTGCGTGGTGGTATGCAAATCTTCGTCAAGACCCTCACAGGGAAGACCATTACCCTTGAGGTTGAGAGCTCAGACACTATTGACAATGTCAAGGCCAAGATCCAAGACAAGGAGGGTATCCCACCAGACCAACAGAGGCTCATCTTCGCTGGTAAGCAGCTTGAGGATGGCCGAACATTGGCTGACTATAACATCCAGAAAGAGTCAACCCTTCACTTGGTCTTGCGTCTCCGTGGTGGAATGCAGATTTTCGTGAAGACCCTTACAGGGAAGACCATCACCCTTGAGGTTGAGAGCTCTGACACCATTGACAATGTCAAAGCCAAGATTCAAGATAAGGAGGGCATTCCACCAGACCAGCAGAGATTGATTTTTGCTGGAAAGCAGCTTGAAGATGGACGTACTCTCGCTGATTACAACAGGAAGCAGTTGGAGGATGGAAGGACTCTCGCTGATTACAACATCCAGAAGGAGTCCACACTTCACCTTGTGCTCCGTCTTCGTGGTGGAAACTAA 960 0.5167 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNRKQLEDGRTLADYNIQKESTLHLVLRLRGGN 319
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto10g0420 319 ProSitePatterns Ubiquitin domain signature. 103 128 IPR019954 -
Sto10g0420 319 SMART ubq_7 153 224 IPR000626 GO:0005515
Sto10g0420 319 SMART ubq_7 229 314 IPR000626 GO:0005515
Sto10g0420 319 SMART ubq_7 1 72 IPR000626 GO:0005515
Sto10g0420 319 SMART ubq_7 77 148 IPR000626 GO:0005515
Sto10g0420 319 ProSiteProfiles Ubiquitin domain profile. 1 76 IPR000626 GO:0005515
Sto10g0420 319 PANTHER UBIQUITIN 13 1 207 - -
Sto10g0420 319 PANTHER UBIQUITIN 13 73 286 - -
Sto10g0420 319 PANTHER UBIQUITIN 13 289 318 - -
Sto10g0420 319 PANTHER UBIQUITIN 73 286 - -
Sto10g0420 319 PANTHER UBIQUITIN 289 318 - -
Sto10g0420 319 PANTHER UBIQUITIN 1 207 - -
Sto10g0420 319 ProSitePatterns Ubiquitin domain signature. 27 52 IPR019954 -
Sto10g0420 319 SUPERFAMILY Ubiquitin-like 287 318 IPR029071 -
Sto10g0420 319 ProSiteProfiles Ubiquitin domain profile. 229 318 IPR000626 GO:0005515
Sto10g0420 319 Pfam Ubiquitin family 290 316 IPR000626 GO:0005515
Sto10g0420 319 Pfam Ubiquitin family 3 74 IPR000626 GO:0005515
Sto10g0420 319 Pfam Ubiquitin family 79 150 IPR000626 GO:0005515
Sto10g0420 319 Pfam Ubiquitin family 231 288 IPR000626 GO:0005515
Sto10g0420 319 Pfam Ubiquitin family 155 226 IPR000626 GO:0005515
Sto10g0420 319 SUPERFAMILY Ubiquitin-like 77 152 IPR029071 -
Sto10g0420 319 CDD Ubl_ubiquitin 77 152 - -
Sto10g0420 319 PRINTS Ubiquitin signature 11 31 IPR019956 -
Sto10g0420 319 PRINTS Ubiquitin signature 32 52 IPR019956 -
Sto10g0420 319 PRINTS Ubiquitin signature 53 74 IPR019956 -
Sto10g0420 319 SUPERFAMILY Ubiquitin-like 1 76 IPR029071 -
Sto10g0420 319 CDD Ubl_ubiquitin 1 76 - -
Sto10g0420 319 CDD Ubl_ubiquitin 153 228 - -
Sto10g0420 319 CDD Ubl_ubiquitin 229 318 - -
Sto10g0420 319 ProSiteProfiles Ubiquitin domain profile. 153 228 IPR000626 GO:0005515
Sto10g0420 319 Gene3D - 289 319 - -
Sto10g0420 319 Gene3D - 153 228 - -
Sto10g0420 319 Gene3D - 77 152 - -
Sto10g0420 319 Gene3D - 1 76 - -
Sto10g0420 319 Gene3D - 229 288 - -
Sto10g0420 319 ProSiteProfiles Ubiquitin domain profile. 77 152 IPR000626 GO:0005515
Sto10g0420 319 ProSitePatterns Ubiquitin domain signature. 179 204 IPR019954 -
Sto10g0420 319 ProSitePatterns Ubiquitin domain signature. 255 280 IPR019954 -
Sto10g0420 319 SUPERFAMILY Ubiquitin-like 152 228 IPR029071 -
Sto10g0420 319 SUPERFAMILY Ubiquitin-like 228 290 IPR029071 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto10g0420 Sto-Chr10 3397966 3399111 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto10g0420 1 77 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 98.701 1.98e-48 157
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto10g0420 K08770 - cit:102612878 601.282
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto10g0420 10 3397966 3399111 Sto10g0420 10 3397966 3399111 ECH