Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto10g0401 ATGAAGAGAAAGTCTAGCTCAGGTCGCCAGAAAATTCCTATTGAGAAAATACCAAAGAAAAGCCATCTTCAAGTCACATTCTCAAAGCGTCGTTCGGGGCTCTTCAAGAAGGCTAGTGAGCTTTGCACATTGTGTGGTGTGAAGATAGCAATTATAGTTTTCTCTCCGGCAGACAAGGCCTTCTCTTTCGGCCACCCAGAAGTAGAATCCATCATCGATCGCTATCTGAACCGAAACCCTATGCCAGAATCCGGGGCTCACCATCTCGTCGAGGCTCACCAGAATGCCAATGTTCGCGACCTCAACATGCAGCTCACGCAGATTCTCAGCCAATTGGAGATAGAGAGGAAGCGAGGAGAAGAGTTAGAGCACGTGCGAAAAGCGAGACAAAGGCAATTCTGGTGGGAAAACCCTATTGaagaattagggtttaatgAATTGCAACAATTGAGGGTTTCAATGGAGGAATTGAAGAAAAATGTAGGGAAAATGAGCAGCAAAATGATGATGGAGCATAGTAGTTTGTCTAATAATTCACCAATTATTGGAACACATGGACTTGGACGTTATGATGCCTTTGAGAGCAAACCTGCGGAGTCCAGCTGTATGATGGCTGGATCCCCGACATCGGATGGCGTGGATGGGCGCGTGGGAGATCGGACGGCTGGTACGCATTCTGAAAAGAAGCGATGCGAATAG 699 0.4607 MKRKSSSGRQKIPIEKIPKKSHLQVTFSKRRSGLFKKASELCTLCGVKIAIIVFSPADKAFSFGHPEVESIIDRYLNRNPMPESGAHHLVEAHQNANVRDLNMQLTQILSQLEIERKRGEELEHVRKARQRQFWWENPIEELGFNELQQLRVSMEELKKNVGKMSSKMMMEHSSLSNNSPIIGTHGLGRYDAFESKPAESSCMMAGSPTSDGVDGRVGDRTAGTHSEKKRCE 232
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto10g0401 232 MobiDBLite consensus disorder prediction 198 232 - -
Sto10g0401 232 MobiDBLite consensus disorder prediction 218 232 - -
Sto10g0401 232 SMART madsneu2 7 66 IPR002100 GO:0003677|GO:0046983
Sto10g0401 232 PRINTS MADS domain signature 9 29 IPR002100 GO:0003677|GO:0046983
Sto10g0401 232 PRINTS MADS domain signature 29 44 IPR002100 GO:0003677|GO:0046983
Sto10g0401 232 PRINTS MADS domain signature 44 65 IPR002100 GO:0003677|GO:0046983
Sto10g0401 232 Coils Coil 147 167 - -
Sto10g0401 232 PANTHER MADS BOX PROTEIN 6 179 - -
Sto10g0401 232 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 16 63 IPR002100 GO:0003677|GO:0046983
Sto10g0401 232 Coils Coil 95 115 - -
Sto10g0401 232 Gene3D - 19 86 IPR036879 GO:0003677|GO:0046983
Sto10g0401 232 Gene3D - 87 179 - -
Sto10g0401 232 SUPERFAMILY SRF-like 8 88 IPR036879 GO:0003677|GO:0046983
Sto10g0401 232 ProSiteProfiles MADS-box domain profile. 7 67 IPR002100 GO:0003677|GO:0046983
Sto10g0401 232 CDD MADS_MEF2_like 8 77 IPR033896 GO:0000977|GO:0045944
Sto10g0401 232 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL62 6 179 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto10g0401 Sto-Chr10 3240900 3244104 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto10g0401 4 169 Type I MADS-box Gene Family AT5G60440 53.254 3.16e-57 182
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Sto10g0401 SRF-TF 7.9e-23 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto10g0401 - - gmx:100793705 297.36
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto10g0401 10 3240900 3244104 Sto10g0401 10 3240900 3244104 ECH