Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto10g0400 ATGGCCAGTCCAATCGTCgcggaggagaagaagaagaaggggcaGCAAAAGATAAAGATCCAAAGAATAGAGAATGAGGCGTCTCTGGGCGTCACATTTTGCAAACGGCGCAAGGGACTCTTCAGTAAGGCCGCCGCTCTCGCCACTCTCTGCGGCGCAGAGGTGGCCATCCTGATGGCTTCGCCCAACGGCCGACTGTACGGTTTCGGAAGCCCCAGCGTGCAGGCGGTGGTGGAGAGATATGTCTCCGGCGGCCCTGCTCAGCCGCAGATGTCTTTTGATGCTCTTGGTAGCCTCCACGCGGAGCTTCGGCGCGTGGTGGCAGAAGTTGAAGTGGAGAAGGAGAGAGCGGAGGAACTGCGGAGGAGTAGGGGGGAACTGGAGGCAAGGTGTTGGATGGCTACTCCTTACGATAGACTTACTCCCACTCAGCTGACGCAGGTGAAGGCGCGTCTGCAAGATATGTCTATGGAACTCACGCGCCTACTTGATAGGCGCGTACCAGTAGCCCACAATCTTTATGATAATGCTTTCCCCACCGTTGATTATAACTTTGCTCCTAATCAGTTCTGCCCTGACGGCGCCTCCTCCTCCTACCCACCGGTGGTGCTACCACCGGCCCAAGGGATTCCTCTGCCGCCACCGCCGCCGCCAATGCCGATGATGCCACCGATGCCGCCGGTGATGAATGAGAATGTGGGGTTTGGTGGTGGAAACATGGTGGCTCCTCCTCCACCTTATGATGGGTACAGATACAGCAACTTGGGTGGATATGGGGGATCTTCACCAGGCCCCAGCGCGGACGCCGTGGTGGAGCGGTatcttcacggcttccaccaCGCGCCGCCGCTGCAGACCTTTGCGGCTTCGACGTCCAGAGCGAGGAGTGATGCTGTTGCTGGTGGACTCCACGCGCAGCTGCAGCGCGTGGAGGAGGAATCGAGGGCTGAGAAGAGGAAAGCGTCGGAgctgaggaggaggaggaaggatCTGGAGGAGAAGTGCTGGATGGCCGCTCCTATCCATACTATGTGTCGGCCTCAGCTTATGGACATGAAGGCGCGTCTTCTGCACATGTCGGAGGAGCTCACGCGCCAAATCTCAATCATGGGCGTCCACAATGCTTCCGACAACGCGGATGACGCTGGAAGCTCCTCCGGGGCGGCACAGCTGGCCGCTGATCAGATGATTTCTCCTCCGCAGATGACGGCGCCGCCGGAGCTTGATGAGAACATGGCCTGGGAAACaaacatgatgatgatgatgtcaCTTGGTGACGATGGATGTGACAACTTGGGAGGACCATATGGTCGTGGAGATGGAGTTAATTAA 1332 0.545 MASPIVAEEKKKKGQQKIKIQRIENEASLGVTFCKRRKGLFSKAAALATLCGAEVAILMASPNGRLYGFGSPSVQAVVERYVSGGPAQPQMSFDALGSLHAELRRVVAEVEVEKERAEELRRSRGELEARCWMATPYDRLTPTQLTQVKARLQDMSMELTRLLDRRVPVAHNLYDNAFPTVDYNFAPNQFCPDGASSSYPPVVLPPAQGIPLPPPPPPMPMMPPMPPVMNENVGFGGGNMVAPPPPYDGYRYSNLGGYGGSSPGPSADAVVERYLHGFHHAPPLQTFAASTSRARSDAVAGGLHAQLQRVEEESRAEKRKASELRRRRKDLEEKCWMAAPIHTMCRPQLMDMKARLLHMSEELTRQISIMGVHNASDNADDAGSSSGAAQLAADQMISPPQMTAPPELDENMAWETNMMMMMSLGDDGCDNLGGPYGRGDGVN 443
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto10g0400 443 Gene3D - 25 91 IPR036879 GO:0003677|GO:0046983
Sto10g0400 443 ProSiteProfiles MADS-box domain profile. 13 73 IPR002100 GO:0003677|GO:0046983
Sto10g0400 443 MobiDBLite consensus disorder prediction 304 327 - -
Sto10g0400 443 SMART madsneu2 13 72 IPR002100 GO:0003677|GO:0046983
Sto10g0400 443 PANTHER - 14 155 - -
Sto10g0400 443 PANTHER - 264 422 - -
Sto10g0400 443 MobiDBLite consensus disorder prediction 308 327 - -
Sto10g0400 443 Coils Coil 100 130 - -
Sto10g0400 443 SUPERFAMILY SRF-like 14 84 IPR036879 GO:0003677|GO:0046983
Sto10g0400 443 PRINTS MADS domain signature 15 35 IPR002100 GO:0003677|GO:0046983
Sto10g0400 443 PRINTS MADS domain signature 35 50 IPR002100 GO:0003677|GO:0046983
Sto10g0400 443 PRINTS MADS domain signature 50 71 IPR002100 GO:0003677|GO:0046983
Sto10g0400 443 Coils Coil 6 26 - -
Sto10g0400 443 Coils Coil 307 334 - -
Sto10g0400 443 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 22 69 IPR002100 GO:0003677|GO:0046983
Sto10g0400 443 Coils Coil 145 165 - -
Sto10g0400 443 PANTHER SERUM RESPONSE FACTOR HOMOLOG 264 422 - -
Sto10g0400 443 PANTHER SERUM RESPONSE FACTOR HOMOLOG 14 155 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto10g0400 Sto-Chr10 3228171 3233846 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto10g0400 10 174 Type I MADS-box Gene Family AT5G60440 35.556 5.54e-32 122
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Sto10g0400 SRF-TF 3.5e-19 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto10g0400 - - jre:108992373 115.931