Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto10g0398 ATGTATTCTGTACTCTGTACTTCGGTTTTCAGGGAAAACACGTGTAGTTCACACCTATTCTCTCTCACCCCAAAGGAATCATCTCTCTATGCCTTCCACGTGGCAAACAGACGACGAGtactttctatttatttttccttaacTTCTGCCATGGCTAGTCCGGCTGGGGAGAAGAAGACGAAGGGACAGCAAAAGATAGAGCTGCGAAGAATGGAGAATGAGAAGTCTCTGAGTGTCACATTTTCCAAACGACGGAAGGGACTATTCAGTAAGGCCAGCGCTCTCGCCACTCTCTGCGGCGCTGAGGTGGCCATCATGGTGGTTTCGCCCGGCGGCCGGCTCTACGCTTTCGGCAGCCCCAACGTCCAGTCCGTGGTGGATCGATATCTCTCCGGCGGCCGTGCGCAGCCACAGGATTCATTAGATGTTCTCGGTAACCTCCACGCGCAGCTCCGGCGCGTGGTGGCACAAGTGGAGGCAGAGGAGAGGCGAGCGGAGGAGCTGAGGAGGACGAGGGAGGAGTTGGAGGCCAAGTGTTGGATGGCTGCTCCTTATGATACACTCTCTCCGACTCAGCTGATGCAGGTGAAGGCGCGTCTGCTGGAGATGTCTATGGAACTCACGCGCCTATTGAATAGGCGCGTAGCCATTCACAATCACAATAATAATGCTTTCGCCGCCGCTGATTATAACCTTGGTCATAATCAGTTCTGCCCTGGCGGCGCCTCCTCCTCCCACAACCCGGTGGCGCTGCCACGGGCTCGAGGGATTCCTCTGCCACCAATGCCGATAATGTCGCCGGTACTCGATCAGAATCAGGCGTTTGGTGGAAACATGTtgactcctcctcctcctccaccacctTATTATAATGGATGGAACAACATGGGAGGATATGGTGGACCTCCTGGAGGGTTTTATTGA 924 0.5184 MYSVLCTSVFRENTCSSHLFSLTPKESSLYAFHVANRRRVLSIYFSLTSAMASPAGEKKTKGQQKIELRRMENEKSLSVTFSKRRKGLFSKASALATLCGAEVAIMVVSPGGRLYAFGSPNVQSVVDRYLSGGRAQPQDSLDVLGNLHAQLRRVVAQVEAEERRAEELRRTREELEAKCWMAAPYDTLSPTQLMQVKARLLEMSMELTRLLNRRVAIHNHNNNAFAAADYNLGHNQFCPGGASSSHNPVALPRARGIPLPPMPIMSPVLDQNQAFGGNMLTPPPPPPPYYNGWNNMGGYGGPPGGFY 307
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto10g0398 307 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL61 63 221 - -
Sto10g0398 307 ProSiteProfiles MADS-box domain profile. 61 121 IPR002100 GO:0003677|GO:0046983
Sto10g0398 307 PRINTS MADS domain signature 63 83 IPR002100 GO:0003677|GO:0046983
Sto10g0398 307 PRINTS MADS domain signature 83 98 IPR002100 GO:0003677|GO:0046983
Sto10g0398 307 PRINTS MADS domain signature 98 119 IPR002100 GO:0003677|GO:0046983
Sto10g0398 307 SMART madsneu2 61 120 IPR002100 GO:0003677|GO:0046983
Sto10g0398 307 PANTHER MADS BOX PROTEIN 63 221 - -
Sto10g0398 307 Coils Coil 148 178 - -
Sto10g0398 307 SUPERFAMILY SRF-like 62 131 IPR036879 GO:0003677|GO:0046983
Sto10g0398 307 Gene3D - 73 143 IPR036879 GO:0003677|GO:0046983
Sto10g0398 307 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 70 117 IPR002100 GO:0003677|GO:0046983
Sto10g0398 307 CDD MADS_MEF2_like 62 130 IPR033896 GO:0000977|GO:0045944
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto10g0398 Sto-Chr10 3213306 3215462 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto10g0398 58 208 Type I MADS-box Gene Family AT5G60440 41.975 9.79e-38 134
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Sto10g0398 SRF-TF 1.5e-20 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto10g0398 - - gmx:100779916 136.732
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto10g0398 10 3213306 3215462 Sto10g0398 10 3213306 3215462 ECH