Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto10g0397 ATGTCTCTCCACGTTGGATTCCGGCCATATCAGATTTCTGTTGGACCTTGTTTGGCTGCGAGCATTGCTTTGATCGTAGAGAAGAAGACGAGGGGGCAGCAAAAGATAAAGATGCAGAGGATAGAGAACGAGACGGCTCGGAGTATCACCTTTTCCAAACGGCGCAAGGGGCTCTTCAGTAAAGCCAGCGCTCTAGCCACTCTCACCGGCGCTGAGGTGGCCGTCATGGTGGTGTCCCCCGGCGGCCGAATCTTCGGCTTCGGCACTCCCAACGTGCAATCCGTCGTGGAGCGATTTCTGTGCGGCGGCCACCGTGCACCGCCGCAGAACTCCTTTGATGTTCTCGGTAGCCTTCACGCGCAGCTTCGGCGCGTGGTGGCTCAAGTAGAAGCTGAGAATGAGAGAGCCAAGGAGCTGAAGAGGAAGAGGGAGTATTTGGAGGCCAGGTTTTGGATGGCTGCTCCCTATGATAGACTCTCTCCCACACAACTGATGCAAGTGAAGGCGCGTCTAGTGGAGATGTCTCAGCAACTCACGCGCCTCCCCatttacaacaacaataataataattccccTGCTGTTAACCCTACTCATCGTCAGTTCTACTCCGGCGTGCCGTTACCACCAGCTAGGGGAATTCCTCTGCGGCAGCCGCCAATGCCGATGATGTCTCGGGGACTCACGCGCCGAGTTGATAGGCGTGTCCCCTTTTACAATCACCACCAccgcaacaacaacaacaacaacaacaacaacaacaacaacaacaacaacaacaacaacaacaacaacaacaacaacaacaacaacaacaacaacaacaacaacaacaacaacaattttCCGGCTGTTAACCCTACTCATCATCAGTTCTACGCCGGCGTGCCGCTACCACCAGCTAGAGGGATTCCTCTGCAGCCAACGCCAACGCCGATGATGCCGCCAATGCTACCGGTGACTCATCAGAATCAGGCATTAGGTGGAAACATGATGATGCCTCCTCCACCTTATGACCGTAGGTGGAACAACATGGGAGGAAATGGTGGACCTCCCGGAGGGTTTTATTGA 1068 0.485 MSLHVGFRPYQISVGPCLAASIALIVEKKTRGQQKIKMQRIENETARSITFSKRRKGLFSKASALATLTGAEVAVMVVSPGGRIFGFGTPNVQSVVERFLCGGHRAPPQNSFDVLGSLHAQLRRVVAQVEAENERAKELKRKREYLEARFWMAAPYDRLSPTQLMQVKARLVEMSQQLTRLPIYNNNNNNSPAVNPTHRQFYSGVPLPPARGIPLRQPPMPMMSRGLTRRVDRRVPFYNHHHRNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNFPAVNPTHHQFYAGVPLPPARGIPLQPTPTPMMPPMLPVTHQNQALGGNMMMPPPPYDRRWNNMGGNGGPPGGFY 355
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto10g0397 355 SMART madsneu2 31 90 IPR002100 GO:0003677|GO:0046983
Sto10g0397 355 Gene3D - 43 108 IPR036879 GO:0003677|GO:0046983
Sto10g0397 355 SUPERFAMILY SRF-like 32 101 IPR036879 GO:0003677|GO:0046983
Sto10g0397 355 MobiDBLite consensus disorder prediction 241 285 - -
Sto10g0397 355 PRINTS MADS domain signature 33 53 IPR002100 GO:0003677|GO:0046983
Sto10g0397 355 PRINTS MADS domain signature 53 68 IPR002100 GO:0003677|GO:0046983
Sto10g0397 355 PRINTS MADS domain signature 68 89 IPR002100 GO:0003677|GO:0046983
Sto10g0397 355 PANTHER MADS BOX PROTEIN 33 271 - -
Sto10g0397 355 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL61 33 271 - -
Sto10g0397 355 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 40 87 IPR002100 GO:0003677|GO:0046983
Sto10g0397 355 ProSiteProfiles MADS-box domain profile. 31 91 IPR002100 GO:0003677|GO:0046983
Sto10g0397 355 Coils Coil 119 149 - -
Sto10g0397 355 MobiDBLite consensus disorder prediction 239 285 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto10g0397 Sto-Chr10 3198973 3200677 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto10g0397 28 179 Type I MADS-box Gene Family AT5G60440 40.123 4.35e-32 120
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Sto10g0397 SRF-TF 6.1e-20 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto10g0397 - K12412 gmx:100779916 139.043
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto10g0397 10 3198973 3200677 Sto10g0397 10 3198973 3200677 ECH