Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto10g0395 ATGGCCAGTCAGAATGTGGAGAAGAAGACGAGGGGGCAGCAAAAGATAACGATGCAAAGGATGGAGAACGAGACGGCTCGGAGTATCACCTTTTCCAAACGACGCAAGGGGCTCTTCAGCAAAGCCAGCGCTCTAGCCACCCTCACCGGCGCTGAGGTGGCCATCATGGTCATGTCGCCCGGCGGCCGCCTCTTCGGTTTCGGCAGTCCTAATGTCCAATCCGTCGTGCAGCGATATCTCGACGGCGGCCGCCCTGCGCCGCTGCAGAACTCTTGTGGTGATGTTCTCGGTAACCTCCACGCGGAGCTTCGGCGCGTGGTGGCGCAATTTGAAGCTGAGAAGGCGAGAGGCGAGGAGCTGAGGAGGAAAAGGGAGGAATTGGAGGCACACTTTTGGATGGCTGGTCCTGATCCTTATCATTCACTCTCTCCCACACAGCTCATACAGGTGAAGGCGCGTCTGGTGGCGATGTCTCAGGAACTCACCGGTCTGGTTGATAGGCGCGTCAATAGTTATAATCACAACAGcagcagcaacaacaacaacaataatgataataattttgcGGCTGTGAACCCCACTCATCATCAGTTCTACGGCGGCGTGCCGCTGCCACCAGCATGGGGGATTCCTCTGCCGCCCCCGTCGACAATGCCGATGATGTCTCACGAACTCACGCGCCGAACTGATAGGCGCGTTCCTATTTACAATCACAACAACAGCAGCAGCAACAaccacattaataataataataataataacaataatttccATGATGTTAATCCTACTCATCATGAGTTCTATGCTGGGGTGCCGCTACCACCAGCTAGGGGGATTCTTCTGCCGCCGCCAATGTCATCGGAGACTCATCAGAATCAGGCATTAGGTGGAAACATGACGATggctcctcctcctccaccttATGATAGTAGGTGGAACAACATGGGAGGATATGGTGGACCTCCTGGAGGTCCAATCGTCGcggagaagaagcagaagaagaggCAGCAGAAGATAAAGATCCAAAGAATAGAGAATGAGGCGTCTCTGGGCGTCACATTTTGCAAACGACGCAAGGGACTCTTCAGTAAGGCCGCCGCTCTCGCCACTCTCTGCGGCGCAGAGGTGGCCATCCTGATGGCTTCGCGCACCGGCCAGATCTACGGCTTCGGAAGCCCCAGTGTGCAGGCGGTGGTGGACAGATATCTCTCCGGCAACCCTGCTCAGCCGCAGATTTCTTTTGATGGTCTTGGTAGCCTCCACGCGGAGCTTCGGCGCGTGGTGGCACAAGTTGAAGTGGAGAAGGAGAGAGCGGAGGAACTGCGGAGGAGTAGGGGGGAACTGGAGGCAAGGTGTTGGATGGCCACTCCTTATGATAGACTTACTCCCACTCAGCTTATGCAGGTGAAGCTGCGTCTGCAAGATATGTCTATGGAACTCACGCGCCTACTTGATAGGCGCGTACCAGAAGCCCACAATCTTTATGATAATGCTTTCCCCGCCGCTGATTATAACTTTGCTCCTAATCAGTACTTCTGCCCTGCCACCGCCTCCTCCTCCCACCAACCGGTGGTGCTGCCACCGCCCCAAGGGATTCCTCTTCCGCCGCCGCCAATGCCAATGATGATGCCACCGATGCCGCCGGTGATGATGAATGAGAATGTGGGGTTTGGTGGTGGAAACATGATGGCTCCTCCACCACCTTATGATCATGGGCACAACAACATGGGAGGATACGGTGGACCTCCTGCAGGGTTCTATTGA 1764 0.521 MASQNVEKKTRGQQKITMQRMENETARSITFSKRRKGLFSKASALATLTGAEVAIMVMSPGGRLFGFGSPNVQSVVQRYLDGGRPAPLQNSCGDVLGNLHAELRRVVAQFEAEKARGEELRRKREELEAHFWMAGPDPYHSLSPTQLIQVKARLVAMSQELTGLVDRRVNSYNHNSSSNNNNNNDNNFAAVNPTHHQFYGGVPLPPAWGIPLPPPSTMPMMSHELTRRTDRRVPIYNHNNSSSNNHINNNNNNNNNFHDVNPTHHEFYAGVPLPPARGILLPPPMSSETHQNQALGGNMTMAPPPPPYDSRWNNMGGYGGPPGGPIVAEKKQKKRQQKIKIQRIENEASLGVTFCKRRKGLFSKAAALATLCGAEVAILMASRTGQIYGFGSPSVQAVVDRYLSGNPAQPQISFDGLGSLHAELRRVVAQVEVEKERAEELRRSRGELEARCWMATPYDRLTPTQLMQVKLRLQDMSMELTRLLDRRVPEAHNLYDNAFPAADYNFAPNQYFCPATASSSHQPVVLPPPQGIPLPPPPMPMMMPPMPPVMMNENVGFGGGNMMAPPPPYDHGHNNMGGYGGPPAGFY 587
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto10g0395 587 Coils Coil 327 347 - -
Sto10g0395 587 Gene3D - 23 90 IPR036879 GO:0003677|GO:0046983
Sto10g0395 587 Gene3D - 346 413 IPR036879 GO:0003677|GO:0046983
Sto10g0395 587 Coils Coil 110 130 - -
Sto10g0395 587 PANTHER MADS BOX PROTEIN 13 196 - -
Sto10g0395 587 PANTHER MADS BOX PROTEIN 336 493 - -
Sto10g0395 587 SUPERFAMILY SRF-like 337 408 IPR036879 GO:0003677|GO:0046983
Sto10g0395 587 ProSiteProfiles MADS-box domain profile. 11 71 IPR002100 GO:0003677|GO:0046983
Sto10g0395 587 PRINTS MADS domain signature 336 356 IPR002100 GO:0003677|GO:0046983
Sto10g0395 587 PRINTS MADS domain signature 356 371 IPR002100 GO:0003677|GO:0046983
Sto10g0395 587 PRINTS MADS domain signature 371 392 IPR002100 GO:0003677|GO:0046983
Sto10g0395 587 ProSiteProfiles MADS-box domain profile. 334 394 IPR002100 GO:0003677|GO:0046983
Sto10g0395 587 Coils Coil 421 451 - -
Sto10g0395 587 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL61 13 196 - -
Sto10g0395 587 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL61 336 493 - -
Sto10g0395 587 MobiDBLite consensus disorder prediction 1 26 - -
Sto10g0395 587 SMART madsneu2 334 393 IPR002100 GO:0003677|GO:0046983
Sto10g0395 587 SMART madsneu2 11 70 IPR002100 GO:0003677|GO:0046983
Sto10g0395 587 SUPERFAMILY SRF-like 12 81 IPR036879 GO:0003677|GO:0046983
Sto10g0395 587 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 343 390 IPR002100 GO:0003677|GO:0046983
Sto10g0395 587 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 20 67 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto10g0395 Sto-Chr10 3188168 3192621 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto10g0395 331 489 Type I MADS-box Gene Family AT5G60440 35.632 3.09e-28 113
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Sto10g0395 SRF-TF 1.6e-18 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto10g0395 - - jre:108992373 125.176
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto10g0395 10 3188168 3192621 Sto10g0395 10 3188168 3192621 ECH