Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto10g0394 ATGGGAAAAGAAGAGGAGCGAGTTTTCAATTTCCAAAATCTAAAGCAGCTTCTCTCTAACAAATTCTCTTTGGACTTTGGAGAGACACCTCAATATTCCTGGCTTGATTCTCGCAGTGCTATACGCAACGTGATATACGATGCCCTTCGGTTCAAATTCCTTGAGAATATCCGTACTAGGGATTCCATTTCTTGTGTGATTCGCAATTCCTTGTTTCCATATTGGTTTTTGGGAGGTGCGGAGATGAGGATTGCCAGAGAAGTTTCCTCTCAAGGAGAGGCGGAGATGGAAGGGAAAGAAGTGAACGCAGTCCGTGGTGGAGGGTCTCCTCAGCCACAGGAACTGGTGGTGGGATACGCCTTGACTGCCAAGAAGAAGAGTAGCTTTTTGAAGCCAAAGTTTATTGGCCTTGCCCGGAGTAAGGGGATCTCTTTTGTTGCAATTGATGTAAGCAAACCCCTGTCAGAACAAGGTCATTTTGACATTGTTTTGCATAAGGCTGCATGTTCTTTACAGCTGTCAGGGAAGGAGTGGCGTGAGGTTATTGAGgaCTACGGGCAAAAACATCCAGAAGTGATCATCATTGATCCTCCTGATGCAATTCAACGTTTACAAAATCGCCAATCCATGTTGCAACATGTGGCAGATCTGAACTTGTCTGATTGCTATGGTAAAATTGGCATTCCACGACACTTGGTTGTCATAGAAGATCCAACTTCCATCCCTTTTGAAGTTGCCAAAGCTGGAATGAAGTTCCCACTAGTTGCAAAACCATTAGTTGTGGATGACAGCGCAAAGTCACATGATCTATGTCTTGTTTATGAGGAAATGTCTCTCTTTGAGCTTGAGCCTCCGTTGGTTATTCAAGAGTTTGTCAATCATGGTGGTCTTCTCTTTAAAGTTTATGTTATTGGGGAAACCATTAAAGTTGTGAGGCGTTTCTCTCTACCTAATATCAGCGAATTTGAGCTATCAAAGGTGGCTGGTATAGTTCGTTTTCCAAGGGTTTCAAGTGCAGAAGCTTCCGCAGATAATGCTGATCTAGATCCTAGTATTGCTGAGCTTCCACCACAACCCTTATTGCAGATGCTTGCAAGGGACCTTCGTCGCAGCTtgGACGCGAGCTCGAGCCAGAAGAGGCGGAGCAAGGGACGCCAAAAGAttgagatgaagaagatgagcaATGAGAGCAACTTGCAGGTGACCTTCTCGAAGCGCCGGAACGGGTTGTTCAAGAAGGCGAGCGAGCTCTGCACACTGTGCGGCGCCGAGGTGGCGCTCATTGTTTTTTCGCCAGGGGAGAAGGCGTTTTCCTTCGGCCACCCGAACGTGGAGGCCACGCTGGACCGGTACCTCAACCGTGGGCCGGGCCCACGGGCCCTGCCGCCGGCCTCCATGCAGATCATGGAGGCCCACCGGAATGCCAACGTGCGTGATCTGAACACGCAGCTGATGGACGCGATGGCGCAGCTGGAAGCCGAGAAGAAGCGCGGCGATGAGCTGAACGGGAGGCAGAAGGAGATGGAGGCGCTGTTCTGGTGGGCTAAGCCGCACGAGAGCATGAGTAGGGATCAGCTGGTGACGCTCAAGGCGCGTCTGGAGGACTTGAAGAAGAACATCACGCGCGAAGCCGATCGCCTCCTTATTCATTCTGCTGCTAATGCCCAGTTCTATGCTCGGACTGCTGCATCGGCTCCACCGCCGGCTCCACCGGCTTTGCCGGTGGGAGCGCCGCCGCTTCCACCAACTCCCGCGTTTCATCCGCCAATGCCGATGCCGATGCCACCTCCACCACCACCGGCAGCAGCTATGCAGAATCCTATGTTTGAGAGAAACATGATGCCCCCGCAGCAACCTCAGGCACCGCCGGTGTTGCCACCGCAGGGGTTCGGGTCGTATGAGAACGAAATGGGAGGAGGCAGAGCCGGAGGCGGAGGGTACGGTGGATCAGGATACTACTGA 1962 0.5112 MGKEEERVFNFQNLKQLLSNKFSLDFGETPQYSWLDSRSAIRNVIYDALRFKFLENIRTRDSISCVIRNSLFPYWFLGGAEMRIAREVSSQGEAEMEGKEVNAVRGGGSPQPQELVVGYALTAKKKSSFLKPKFIGLARSKGISFVAIDVSKPLSEQGHFDIVLHKAACSLQLSGKEWREVIEDYGQKHPEVIIIDPPDAIQRLQNRQSMLQHVADLNLSDCYGKIGIPRHLVVIEDPTSIPFEVAKAGMKFPLVAKPLVVDDSAKSHDLCLVYEEMSLFELEPPLVIQEFVNHGGLLFKVYVIGETIKVVRRFSLPNISEFELSKVAGIVRFPRVSSAEASADNADLDPSIAELPPQPLLQMLARDLRRSLDASSSQKRRSKGRQKIEMKKMSNESNLQVTFSKRRNGLFKKASELCTLCGAEVALIVFSPGEKAFSFGHPNVEATLDRYLNRGPGPRALPPASMQIMEAHRNANVRDLNTQLMDAMAQLEAEKKRGDELNGRQKEMEALFWWAKPHESMSRDQLVTLKARLEDLKKNITREADRLLIHSAANAQFYARTAASAPPPAPPALPVGAPPLPPTPAFHPPMPMPMPPPPPPAAAMQNPMFERNMMPPQQPQAPPVLPPQGFGSYENEMGGGRAGGGGYGGSGYY 653
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto10g0394 653 Coils Coil 523 550 - -
Sto10g0394 653 Pfam Inositol 1,3,4-trisphosphate 5/6-kinase ATP-grasp domain 223 372 IPR040464 -
Sto10g0394 653 Gene3D - 395 456 IPR036879 GO:0003677|GO:0046983
Sto10g0394 653 MobiDBLite consensus disorder prediction 564 600 - -
Sto10g0394 653 Gene3D - 233 330 - -
Sto10g0394 653 CDD MADS_MEF2_like 384 453 IPR033896 GO:0000977|GO:0045944
Sto10g0394 653 Coils Coil 474 497 - -
Sto10g0394 653 PANTHER INOSITOL-TETRAKISPHOSPHATE 1-KINASE 82 372 IPR008656 GO:0000287|GO:0005524|GO:0032957|GO:0047325|GO:0052725|GO:0052726
Sto10g0394 653 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 392 439 IPR002100 GO:0003677|GO:0046983
Sto10g0394 653 Pfam Inositol 1,3,4-trisphosphate 5/6-kinase pre-ATP-grasp domain 116 201 IPR041429 -
Sto10g0394 653 PRINTS MADS domain signature 385 405 IPR002100 GO:0003677|GO:0046983
Sto10g0394 653 PRINTS MADS domain signature 405 420 IPR002100 GO:0003677|GO:0046983
Sto10g0394 653 PRINTS MADS domain signature 420 441 IPR002100 GO:0003677|GO:0046983
Sto10g0394 653 Gene3D - 109 220 - -
Sto10g0394 653 MobiDBLite consensus disorder prediction 562 600 - -
Sto10g0394 653 Gene3D - 464 562 - -
Sto10g0394 653 PANTHER INOSITOL-TETRAKISPHOSPHATE 1-KINASE 2 82 372 - -
Sto10g0394 653 SMART madsneu2 383 442 IPR002100 GO:0003677|GO:0046983
Sto10g0394 653 ProSiteProfiles MADS-box domain profile. 383 443 IPR002100 GO:0003677|GO:0046983
Sto10g0394 653 SUPERFAMILY SRF-like 384 457 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto10g0394 Sto-Chr10 3169932 3179228 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto10g0394 380 564 Type I MADS-box Gene Family AT5G60440 54.497 8.56e-59 198
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Sto10g0394 Ins134_P3_kin 4.3e-56 CL0179
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto10g0394 K00913 - gmx:100127410 377.481
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto10g0394 10 3169932 3179228 Sto10g0394 10 3169932 3179228 ECH