Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto10g0380 ATGAGCAAACCCACACACACCATTTCTCTCATTCTCTCCCTCCCATTAACCCCAATGTCTCACTCtcactcctcctcctcctccgccgCCGCCACTACCCATCTTCCCTCCTCCGACCGCCACCACTCACCCCCGTCCGATGACACCGCCATCATCGGCGAATTCATAGACAGGGAGACGCATCACATGCCGAGCCCCGATTATCTCCAACGCCTCCGTGACCGTTCGATCGACGTCTCAGCTCGCGAGAACTCCATCAACTGGATCTTAATGGTAGGGAGGAAGGGAGGGGTGCACGGGCATTACCGGTTTCGTCCACTAACGGCGTTACTCTCCGTCAACTACATGGACCGTTTCCTCTCCTGCTCTTCCCTTCCGCGACCAAGTGCGTGGGCGTTTCATCTACTCTCAGTGGCTTGTTTGTCTCTAGCAGCCAAAATGGAGGAGCCCCGAGTCCCTCTCTTGCTCGACCTCCAATTATTCGAACCGGGTTTTATATTCGAACCCATCACGGTTCAGAGAATGGAGCTTCATGTCCTAAGTACCCTCAAATGGAGATTGCGCTCCGTCACCCCCTTCGATTACCTCCATTACTTCATCTCCAAGCTCACTAATCACCCTCCTTCTTCATCGGAGTCCGACCCGAAACCCGAATCCATGACCCGATTACTCTCTCGGGCCTCTCGCCTACTCCTTACCACCACGCGCGTTATTGAGCTGATGAGATTTCCGCCGTCGACGGTTGCCGCCGCCGCTGCGGTGGCCTGCTCCGCTGGACGAGGCCGCGATATCAACCAATCACTATCGTGCTTTCATGACAGAGTAGACAAAGAAATGGTGAGAAGCTGTCACCAACTCATGGAGGAGTACGTGGCGGACACGTGTCCGAAACCTGGGCACAGTAAAAGGCGCAGAGCTGAGGTGGCGCCTCCTTCAAGCCCCGTCGGCGTGCTCGACGCCGCCACTTATGGGAGCTGCGACACTCGTTCGGAGAACCCTGGCTCAAGAAGCCAAGCCGAGGAGCCGGAGCCGTCTGAGAAGCGGGGGAGATCCTCTGTGCCGGATGTACAGCGGCAGTAG 1080 0.5546 MSKPTHTISLILSLPLTPMSHSHSSSSSAAATTHLPSSDRHHSPPSDDTAIIGEFIDRETHHMPSPDYLQRLRDRSIDVSARENSINWILMVGRKGGVHGHYRFRPLTALLSVNYMDRFLSCSSLPRPSAWAFHLLSVACLSLAAKMEEPRVPLLLDLQLFEPGFIFEPITVQRMELHVLSTLKWRLRSVTPFDYLHYFISKLTNHPPSSSESDPKPESMTRLLSRASRLLLTTTRVIELMRFPPSTVAAAAAVACSAGRGRDINQSLSCFHDRVDKEMVRSCHQLMEEYVADTCPKPGHSKRRRAEVAPPSSPVGVLDAATYGSCDTRSENPGSRSQAEEPEPSEKRGRSSVPDVQRQ 359
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto10g0380 359 Pfam Cyclin, N-terminal domain 51 187 IPR006671 -
Sto10g0380 359 Gene3D - 56 285 - -
Sto10g0380 359 CDD CYCLIN 82 180 IPR013763 -
Sto10g0380 359 MobiDBLite consensus disorder prediction 295 359 - -
Sto10g0380 359 Pfam Cyclin, C-terminal domain 190 292 IPR004367 -
Sto10g0380 359 PANTHER CYCLINS 35 348 IPR039361 -
Sto10g0380 359 MobiDBLite consensus disorder prediction 334 359 - -
Sto10g0380 359 MobiDBLite consensus disorder prediction 18 49 - -
Sto10g0380 359 MobiDBLite consensus disorder prediction 18 39 - -
Sto10g0380 359 PANTHER CYCLIN-D2-1-LIKE 35 348 - -
Sto10g0380 359 SMART Cyclin_C_2 190 314 IPR004367 -
Sto10g0380 359 SMART cyclin_7 87 181 IPR013763 -
Sto10g0380 359 SUPERFAMILY Cyclin-like 51 187 IPR036915 -
Sto10g0380 359 Gene3D - 65 188 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto10g0380 Sto-Chr10 3041061 3042687 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto10g0380 37 288 Core Cell Cycle Gene Families AT1G70210 42.248 3.76e-58 190
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto10g0380 K18810 - tcc:18608104 354.369
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto10g0380 10 3041061 3042687 Sto10g0380 10 3041061 3042687 ECH
Sto2g0490 2 4237388 4239602 Sto10g0380 10 3041061 3042687 ECH