Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto10g0376 ATGGGTGCTCCTAAGCAGAAATGGACACCAGAAGAAGAGGCGGCCCTTAAAGCTGGAGTTGTTAAGCATGGGGCGGGAAAATGGCGGACTATACTCAAGGATCCAGAGTTTAGTAGGGTCTTGTACCTGCGGTCAAATGTAGATCTTAAGGATAAATGGAGAAACATGAGTGTGATGGCAAATGGATGGACTTCAAGGGACAAGTCTAGGTTAGCCATAAGAAGGGTGCAACCGTTCCCCAGACGGGATGTGAATTCTATGGCTCTTACTCCTTTTGTTCCaagtgatgaagaagatgaggaTTTTAGGCCTCAAGTTTCTAGAGATATCGTGCAGATTCCTGGTCCAAATAGATTGGATAGCCGTATAATGGAAGCAATAACTAGCTTGGGTGAGGCTGGTGGTTCCAATAAGACAGCTATTGCAGCATACATAGAGGACCAATATTGGGCACCTTCAGACTTCAAAAGGTTATTATCAGCAAAATTGAAGTACTTGACGGAAAGTGGGAAGCTGATCAAGGCAAAACGCAAGTATAGGATTGCACCCACCCCAGTTTATTCTGACAGAAGAAGAAACCAATCCGTATTATTGAATGAAAGACAAAGATTCTCTATGAAGTTTGATAAGGATGAGATTAATATCCTTACCAAGTCTCAGATAGATTTAGAAGTAGAAAAGATGAGGTCTATGACTGCTCAAGAGGCTTCTGCAGTTGCTGCTCGAGCGGTAGCAGAAGCAGAAGCTGCCATGACAGAGGCTGAAGAGGCTGCAAGGGAGGCAGAGGCTGCAGAAGCTGATGCAGAGGCAGCTCAAGCTTTTGCTGATGCTGCCATGAAAACAATGAAAGGGAGAAACACATCAACTAAGAATCATCCCCATATTGAACTTTTGAACAATCAAATAATGAAGATGCTTGTGTTTTGGCCAAGTCAATTGGAACCTACTGAGCTAAATTGGTTTTCAAGAAAAACAGAAGCAAATAATGGAAGAGATAAGCAACTTTGGTCAATGTGTTGTTCTGAGTCAGCCTTGAAGATCAGAGCAAGGGCATTTGGTCTAGTGGTCTgcaaagtgaagagagaagctTACAATCAATGA 1101 0.4151 MGAPKQKWTPEEEAALKAGVVKHGAGKWRTILKDPEFSRVLYLRSNVDLKDKWRNMSVMANGWTSRDKSRLAIRRVQPFPRRDVNSMALTPFVPSDEEDEDFRPQVSRDIVQIPGPNRLDSRIMEAITSLGEAGGSNKTAIAAYIEDQYWAPSDFKRLLSAKLKYLTESGKLIKAKRKYRIAPTPVYSDRRRNQSVLLNERQRFSMKFDKDEINILTKSQIDLEVEKMRSMTAQEASAVAARAVAEAEAAMTEAEEAAREAEAAEADAEAAQAFADAAMKTMKGRNTSTKNHPHIELLNNQIMKMLVFWPSQLEPTELNWFSRKTEANNGRDKQLWSMCCSESALKIRARAFGLVVCKVKREAYNQ 366
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto10g0376 366 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 114 183 IPR005818 GO:0000786|GO:0003677|GO:0006334
Sto10g0376 366 Gene3D - 2 59 - -
Sto10g0376 366 Coils Coil 240 274 - -
Sto10g0376 366 SUPERFAMILY "Winged helix" DNA-binding domain 118 192 IPR036390 -
Sto10g0376 366 PANTHER TELOMERE REPEAT-BINDING FACTOR 1 1 288 - -
Sto10g0376 366 Gene3D - 117 191 IPR036388 -
Sto10g0376 366 SMART h15plus2 115 178 IPR005818 GO:0000786|GO:0003677|GO:0006334
Sto10g0376 366 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 1 33 IPR017930 -
Sto10g0376 366 ProSiteProfiles Myb-like domain profile. 5 57 IPR001005 -
Sto10g0376 366 PANTHER SINGLE MYB HISTONE 4 1 288 IPR044597 GO:0003691
Sto10g0376 366 Pfam linker histone H1 and H5 family 123 176 IPR005818 GO:0000786|GO:0003677|GO:0006334
Sto10g0376 366 SUPERFAMILY Homeodomain-like 2 71 IPR009057 -
Sto10g0376 366 Pfam Myb-like DNA-binding domain 5 55 IPR001005 -
Sto10g0376 366 CDD SANT_TRF 6 56 - -
Sto10g0376 366 SMART sant 4 59 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto10g0376 Sto-Chr10 3009110 3016039 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto10g0376 1 286 Single Myb Histone (SMH) Gene Family AT1G49950 65.541 9.57e-96 285
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Sto10g0376 Linker_histone 4.5e-08 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto10g0376 K09422 - gmx:100780698 357.836
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto10g0376 10 3009110 3016039 Sto10g0376 10 3009110 3016039 ECH