Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto10g0360 atggaggCTTGTGGGAGAATATGTGAGGAATGGAGTTCCCTTAGTGGATTCTACACAGCAGAAGAAGCTGACTTTATGACCCATTTGCTTTCTAATAATGACATTTCAGTCCCAGAGGAGCTCTTATTGATTCAAAATCCCACTTTGGGATGCATCAATAATGATATTAGTGTTGCTAATAATAATGCTAATTTCTTCTGTTTCTCACAAGGGAGTAGCTTCAGTACTACTACTACTGATAGTACTTGTGGAAACAACATCATCAACCCTAATTTTGATTCTCTTTCAATGGGTTTTTCCTTTGGGGATGACACGAATTCGCAGGCGGCGAAAAGGGAATGTGAAGTGCTAGTTTCTGAACCGGATCGAAAGGGTAAAAGACCTAGGATTAGCTCATTGGAgGTgccaaagaagaagaggaatgtGAAGTCAAAGAAGAGTGAAAAATGTGGTTCTTGTGTTGTAAGCAACAATAATGAAGAAGATAGAATTAGCCAGAGGCAGAGTTCAAGTAGTTGCTGCTCAGAGGATGAGTCTAATAATGGAGGAGAAGCTTCAAGTTTGAGTCCTAATAAAGATGCTTCACCTCTCAAGTCTAATAAAGCTCCTCCTGCCTCTGATCCACAAAGTGTATATGCAAGAagaagaagagaaagaattaATGAAAGGTTGAGAATCCTGCAAAATCTTGTCCCCAATGGAACTAagGTAGATATAAGCACCATGCTTGAGGAAGCTGTCCAATATGTAAAGTTTTTACAGCTGCAAATTAAGCTTCTGAGCTCTGATGATCTGTGGATGTATGCTCCCATTGCTTACAATGGATTGAACATTGGACTAGACCTCAACATCACTCCAACCAAACAACCTTAG 873 0.3769 MEACGRICEEWSSLSGFYTAEEADFMTHLLSNNDISVPEELLLIQNPTLGCINNDISVANNNANFFCFSQGSSFSTTTTDSTCGNNIINPNFDSLSMGFSFGDDTNSQAAKRECEVLVSEPDRKGKRPRISSLEVPKKKRNVKSKKSEKCGSCVVSNNNEEDRISQRQSSSSCCSEDESNNGGEASSLSPNKDASPLKSNKAPPASDPQSVYARRRRERINERLRILQNLVPNGTKVDISTMLEEAVQYVKFLQLQIKLLSSDDLWMYAPIAYNGLNIGLDLNITPTKQP 290
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto10g0360 290 MobiDBLite consensus disorder prediction 161 212 - -
Sto10g0360 290 MobiDBLite consensus disorder prediction 161 206 - -
Sto10g0360 290 PANTHER TRANSCRIPTION FACTOR BHLH54 123 286 - -
Sto10g0360 290 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 209 269 IPR036638 GO:0046983
Sto10g0360 290 MobiDBLite consensus disorder prediction 117 141 - -
Sto10g0360 290 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 123 286 - -
Sto10g0360 290 Gene3D - 206 261 IPR036638 GO:0046983
Sto10g0360 290 SMART finulus 210 259 IPR011598 GO:0046983
Sto10g0360 290 Pfam Helix-loop-helix DNA-binding domain 214 254 IPR011598 GO:0046983
Sto10g0360 290 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 204 253 IPR011598 GO:0046983
Sto10g0360 290 MobiDBLite consensus disorder prediction 117 138 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto10g0360 Sto-Chr10 2876225 2877948 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto10g0360 1 280 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G33880 39.216 5.58e-54 177
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Sto10g0360 HLH 6e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto10g0360 - - mtr:MTR_5g005110 234.572
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto10g0360 10 2876225 2877948 Sto10g0360 10 2876225 2877948 ECH