Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto10g0355 ATGAAGTTCATGAAACTTGGTTCCAAGCCAGACACCTTTCAAACTGATGGGAACAATGTCAGATATGTAGCAAGTGATTTGGCATCAGATATCGTTGTTAACGTAGGCGATATAAAGTTTTATTTACATAAGTTTCCTCTTCTATCAAAGAGTTCTTACTTACAGAAGTTGATCACCACAACTAACGAAGAAGAAAACAGCGATGAAATTCAAATTTCCGACATTCCCGGTGGTGCTTCTGCCTTTGAGATATGTGCCAAGTTTTGCTATGGCATGACTGTTACCCTCAATGCTTACAATGTGATAGCAGCTCGATGCGCAGCTGAGTATCTCGGAATGCACGAGACTGTGGAGAAAGGGAACCTCATTTACAAGATTGATGTTTTCCTCAGCTCTAGCATTTTCTTCAGTTGGAAGGATTCAATCATTGCTCTTCAGACTTCCAAATCAATTTCACCCTTGGCCAATGACCTAAAAGTGGTCAATCATTGCATAGAATCCATCGCGAATAAGGCGTGCGTTGATGTATCTAAAGTTGACTGGTCGTATAGCTATAACCGAAAAAAGCTCCCAGAGGAAAATGGGATTGATCTGAATCAGAATGGAGTGAGACCTCGTCCGGTGCCAAAAGACTGGTGGGTCGAAGACTTATGTGAGCTTGAAGTTGATTTATATAAGTTGGTAATTAGTACTATCAAAACCAAGGCAATTCAATCTAATGAAGTAATAGGAGAAGCTCTGAAAGCTTATGCTTACCGAAGATTGCCGAATTTCAGCAAGGGTATGGTCGTCCAATGTGGCAGCGATTCGTCAAAGCATCGTTTGGTAGTTGAAACAATTGTTTCGTTATTGCCTGCTGAGAAAGACAGTGTTTCGTGTAGATTCTTGCTCAAGTTATTGAAAGCTGCCATTTTTGTGGAGTTGGAAGATATGACTATAGATGAGCTGGCAAGGAGAATTGGGCAGCAATTGGAGGAGGCTTCTGTGAGTGATATTTTGATACAAGTGCCGAATGAGGAGAATAGTACCGTATATGATGTTAGTATAGTACAGAAAATTGTGAAAGAGTATTTGATGCAGggtcataataataataattccgaGATTGAGTTGGTTGAATGTGGTGGTGGTGAAGTCGAGGAGACAAGAAAGCCGACCGGGATTTTATCCGATGCTTCCAAGCTGATGGTCGCAAAACTCATTGATGGATACCTTGCTGAAATTGCTAAGGATCCCAATTTACCATTGTCAAAGTTTGTTGATCTTGCTGAGTTGGTCTCCGGCATCTCACGTCCTTCTCATGATGGGCTTTACCGGGCCATCGACATGTATCTTAAGACGCACCCGTCGATCAGCAAAGGTGAGAAGAAGAGGATATGCAAGCTGATGGACTGCAAGAAGCTGTCAGTGGATGCCTGCATGCACGCGGTGCAAAACGAGAGGCTACCGTTGCGTGTGGTTGTGCAGGTGCTCTATTTTGAGCAGGTAAGGACGGCCGCATCGTCCGGGACCAGCACGCCCGACATACCGAGAGGagggatgatgatgaaggatcCGAACACGAACAACAACAACGGATCAAGGTCCGCGACAACAACATGCAACACAGAAGATGACTTGGGCACAGCAGAGGAGCTAAAGGCATTAAGGAAGGAACTTGCATCCTTGAGAATGAACAATGATAAAGATAACAATAGTAATATGAAGGGTAATTCAGATAAGGCTGTGATTACAAAGTGGATCCAAAGCCCACAGGCCCAAGCCCACGCAACCCTCTTCGTCGCCAAATTCTTTGGCCGCGCCGCCCTCATGTCTTTCCTCTCCGCCGTCCCTCCCTCCCAAAGATCCCCTTTGTTTGAGTCGCTTTTGTATGAAGCCGTGGGACGAAGCATAAATCCGGTGAACGGAGCGCTCGGCGTCCAGACTGTGCTTCGCGGCGGCGCGTTGATTCCGGCGGATGATGAGAGTTTTGATGAATCCAATCAGCGATACATGGGGGAAGGATCTGGATTATCGAGCATGTTTGAGAGGAAGGTGATTAAGGAGGAAGACTCTGAAACGACCGCGTTTCAGACTACCCAAAGGAAGCTGCTCACACTATTCTTCTGA 2109 0.4443 MKFMKLGSKPDTFQTDGNNVRYVASDLASDIVVNVGDIKFYLHKFPLLSKSSYLQKLITTTNEEENSDEIQISDIPGGASAFEICAKFCYGMTVTLNAYNVIAARCAAEYLGMHETVEKGNLIYKIDVFLSSSIFFSWKDSIIALQTSKSISPLANDLKVVNHCIESIANKACVDVSKVDWSYSYNRKKLPEENGIDLNQNGVRPRPVPKDWWVEDLCELEVDLYKLVISTIKTKAIQSNEVIGEALKAYAYRRLPNFSKGMVVQCGSDSSKHRLVVETIVSLLPAEKDSVSCRFLLKLLKAAIFVELEDMTIDELARRIGQQLEEASVSDILIQVPNEENSTVYDVSIVQKIVKEYLMQGHNNNNSEIELVECGGGEVEETRKPTGILSDASKLMVAKLIDGYLAEIAKDPNLPLSKFVDLAELVSGISRPSHDGLYRAIDMYLKTHPSISKGEKKRICKLMDCKKLSVDACMHAVQNERLPLRVVVQVLYFEQVRTAASSGTSTPDIPRGGMMMKDPNTNNNNGSRSATTTCNTEDDLGTAEELKALRKELASLRMNNDKDNNSNMKGNSDKAVITKWIQSPQAQAHATLFVAKFFGRAALMSFLSAVPPSQRSPLFESLLYEAVGRSINPVNGALGVQTVLRGGALIPADDESFDESNQRYMGEGSGLSSMFERKVIKEEDSETTAFQTTQRKLLTLFF 702
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto10g0355 702 PANTHER OS12G0117600 PROTEIN 1 579 IPR043454 -
Sto10g0355 702 Pfam Lateral organ boundaries (LOB) domain 584 642 IPR004883 -
Sto10g0355 702 ProSiteProfiles LOB domain profile. 559 662 IPR004883 -
Sto10g0355 702 ProSiteProfiles BTB domain profile. 29 98 IPR000210 GO:0005515
Sto10g0355 702 SUPERFAMILY POZ domain 21 118 IPR011333 -
Sto10g0355 702 PANTHER BTB/POZ DOMAIN-CONTAINING PROTEIN NPY2 1 579 IPR029960 GO:0009958
Sto10g0355 702 Pfam BTB/POZ domain 28 118 IPR000210 GO:0005515
Sto10g0355 702 SMART BTB_4 29 128 IPR000210 GO:0005515
Sto10g0355 702 CDD BTB_POZ_NPY3-like 20 125 - -
Sto10g0355 702 ProSiteProfiles NPH3 domain profile. 211 497 IPR027356 -
Sto10g0355 702 Coils Coil 546 566 - -
Sto10g0355 702 Pfam NPH3 family 211 473 IPR027356 -
Sto10g0355 702 Gene3D Potassium Channel Kv1.1; Chain A 9 122 IPR011333 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto10g0355 Sto-Chr10 2817953 2827222 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto10g0355 8 503 EF-hand Containing Proteins AT3G44820 35.741 1.88e-99 318
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Sto10g0355 NPH3 3.5e-91 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto10g0355 - - gmx:100818944 857.825
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto10g0355 10 2817953 2827222 Sto10g0355 10 2817953 2827222 ECH
Sto2g0509 2 4373363 4378116 Sto10g0355 10 2817953 2827222 ECH