Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto10g0349 ATGACTAGATCTCATTCTCATCATTGTGCTGATAAAATATATGGCAGGAATCAGAATGCAATCTATATTGCAGTAGATTTTCAGAACAGTGTGTATCGTGGTGCAATGAGTAAAAATATGGTTGATGCTTTGCATGAAGTGCATCAAACAGGTGGTGATCTTGTTGATAATCCTAAAAGGGATGCTATGTTGTTTGAAGGGGACAGAGATTTTGAGCCACCCAAGGGCATTGAATTTGATTCTCATGAAGCAGCATATTCATTTTATCAAGAATATGGCAAATCAATGGGATTCACCACCTCAATAAAAAACAGCAGACGTTCAAAGAAAACCAAAGAATTCATCGATGCTAAATTCGCGTGCTCGAGGTATGGAGTTACTCCTGAGTCTGATAGTGGGACCAGTCGAAGACCGAGTGTAAAGAAGACAGACTGCAAAGCCTGCATGCATGTGAAGAGAAGGGCAGATGGTAAGTGGATAATTCATGAATTCATAAAGGAGCACAATCATGAGCTTCTACCAGCTTTGGCATATCATTTTCGGATTCATAGAAATGTGAAGTTAGCTGAGAAGAATAATATTGATATATTGCATGCTGTAAGTGAACGCACCAGAAAGATGTATGTTGAAATGTCCAGGCAATCTGGTGGTTGTCTTAATATTGGATCTCTCCAGGGTGATATAAATTACCAGTTTGATAGAGGCCGGTTTGTGGCTTTGGATGAGGGAGATGCCCGCGTTATTCTCGAGTATTTCAAGTTTGTTCAAAAGGAGAATCCAAAATTCTTTTATGCTATTGATTTGAACGAAGAGCAACGATTGAGAAATTTGTTCTGGGTTGATGCAAAAAGTAGGAGTGATTATGCCAGCTTTAATGATGTAGTTTCATTTGATACTTCCTACATCAAAACAAATGATAAATTACCATTTGCTCTCTTTGTTGGAGTGAACAATCACTGTCAACCCATGTTGCTTGGATGTGCATTGGTTGCTGACGAGAGCAAACCGACATTTGTTTGGTTATTGAAGATGTGGCTTCGAGCAATGGGAGGGCAAGCTCCCAAAGTCATTATCACTGATCAAGACAAAGCCTTGAAGGAAGCAATTGAAGAAGTCTTCCCAAACATACGCCATTGCTTTTCGCTTTGGCATGTACTTGATAGGATACCTGAAAATCTTTCCCCTGTGATCAAAAGGTATAACAACTTTTTACCAAAGTTTAACAAGTGCATTTTTAAGTCTTGGACAGATGAAGAGTTTGACATGAGGTGGTGGAAAATGGTCACTAGATTTGAACTCCAGGATGATGTATGGTTTCAATCATTGTACGAAGACCAGAAAAAATGGGTGCCTACTTATATGGGGGATACCTTTCTAGCCGGATTGTCTGCAGCTCAACGTTCTGAGAGTTTGAACTCTTTCTTTGACAAATACATCCATAAAAAAATGAGCCTTAAAGAGTTGATGAAACAATACGAAACTATTCTTCAAAATAGGTACGAAGAGGAAGCCATTGCAGATTTCGATACATTGCACAAACAGCCAGCACTTAAATCTCCTTCACCTTGGGAGAAACAGATGTCAACAGTTTATACACATGCAATATTCAAGAAATTCCAAGTTGAAGTCTTGGGAGTAGTTGGCTGTCATCCTAGAAGAGAAGGTGGTGGAGATGGAAGTGTTGTGAAATTTTTAGTGCAAGACTTTGAGAAAGAGCAAGAGTTTCTGGTAACTTGGAATGAGATGAACTCGGAGGTCTCTTGCTTCTGTCGACTATTTGAATACAAAGGTTTCCTTTGCAGACACGCGTTGAATGTTCTGCAACTTTGTGGTTGTTCAAGTATTCCATATCATTATATTTTGAAGAGGTGGACCAAAGATGCAAAAAGTAGGGAATCCATTACAGATGGGACTGAAAAGATACAAACTAGAGTGCAACGTTATAATGACTTGTGTAAACGAGCTATCGAACTGAGTGAAGAAGGATCATTATCTGAAGAGACTTATAATGTTGTTTTTCGTACACTTGTTGATACCCTGAAGAATTGTGTACATGTGAATAATTCTGACAACAACAATGCAGAAACTAGCAACAATGCTTGTGGCTTTCGTGAAGCAGAAGAAAACCAGGTTAGCCTTGCTGTAAAACAAACTAAAAAGAAGACACCAACTAGGAAACGAAAGGTACAAGTAGAGACGGATGTTATACTCGTTGATGCACAAGACAGCCTGCAGCAAATGGATAACCTTACATCAGATGGAATATCCCTTAATCTTAATGGTTATTATGGTACCCAGCAAAACGTGCAAGGACTgGTACAGTTGAATTTAATGGAGCCTCCTCATGATGGTTACTATGTCAACCATCAGAGCATGCAAAGCCTTGGACACTTGAATTCTATGACTCCAAGCCATGATGGGTTTTTCGGAGCGCAGCAAAGCATTCATGGGCTGGGGCAATTGGAGTTCCGTCCCACAACAACTTTTGGATATAGCTTGCAGGATGAACCTGATCTGAGATCTACTCAATTTCATGGCAACAGTTCAAGGAACACTTAG 2559 0.3959 MTRSHSHHCADKIYGRNQNAIYIAVDFQNSVYRGAMSKNMVDALHEVHQTGGDLVDNPKRDAMLFEGDRDFEPPKGIEFDSHEAAYSFYQEYGKSMGFTTSIKNSRRSKKTKEFIDAKFACSRYGVTPESDSGTSRRPSVKKTDCKACMHVKRRADGKWIIHEFIKEHNHELLPALAYHFRIHRNVKLAEKNNIDILHAVSERTRKMYVEMSRQSGGCLNIGSLQGDINYQFDRGRFVALDEGDARVILEYFKFVQKENPKFFYAIDLNEEQRLRNLFWVDAKSRSDYASFNDVVSFDTSYIKTNDKLPFALFVGVNNHCQPMLLGCALVADESKPTFVWLLKMWLRAMGGQAPKVIITDQDKALKEAIEEVFPNIRHCFSLWHVLDRIPENLSPVIKRYNNFLPKFNKCIFKSWTDEEFDMRWWKMVTRFELQDDVWFQSLYEDQKKWVPTYMGDTFLAGLSAAQRSESLNSFFDKYIHKKMSLKELMKQYETILQNRYEEEAIADFDTLHKQPALKSPSPWEKQMSTVYTHAIFKKFQVEVLGVVGCHPRREGGGDGSVVKFLVQDFEKEQEFLVTWNEMNSEVSCFCRLFEYKGFLCRHALNVLQLCGCSSIPYHYILKRWTKDAKSRESITDGTEKIQTRVQRYNDLCKRAIELSEEGSLSEETYNVVFRTLVDTLKNCVHVNNSDNNNAETSNNACGFREAEENQVSLAVKQTKKKTPTRKRKVQVETDVILVDAQDSLQQMDNLTSDGISLNLNGYYGTQQNVQGLVQLNLMEPPHDGYYVNHQSMQSLGHLNSMTPSHDGFFGAQQSIHGLGQLEFRPTTTFGYSLQDEPDLRSTQFHGNSSRNT 852
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto10g0349 852 SMART 26again6 586 613 IPR006564 GO:0008270
Sto10g0349 852 Pfam SWIM zinc finger 584 610 IPR007527 GO:0008270
Sto10g0349 852 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 45 763 IPR031052 GO:0006355
Sto10g0349 852 ProSiteProfiles Zinc finger SWIM-type profile. 575 611 IPR007527 GO:0008270
Sto10g0349 852 MobiDBLite consensus disorder prediction 832 852 - -
Sto10g0349 852 Pfam FAR1 DNA-binding domain 87 174 IPR004330 -
Sto10g0349 852 Pfam MULE transposase domain 294 386 IPR018289 -
Sto10g0349 852 PANTHER PROTEIN FAR-RED ELONGATED HYPOCOTYL 3 45 763 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto10g0349 Sto-Chr10 2775893 2779379 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Sto10g0349 MULE 6e-24 CL0219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto10g0349 - - lang:109346405 1337.01