Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto10g0347 ATGACGAGTGCTTCGGAGCTATTCCACAATAGGAGGTTTCGTTTGGGACGAACCACTAACGATCTAGGGTTTGATTCGTTGCCTGACCGAGATCTTCACCTCGATTTCAATAAccgccatcatcatcatcaccatctaCATGATGTGCGTGGTGGTGAGACTGTCCGACGGTCGACGCCTATGCGGCGGCTATGTCACCGTTGCTCCTATTCGGAGCGAGCAGCAGGTAGATTTGACCTAAGAAATAGCCGCTTTCTTTCAGACAATGCCAATGCTTCAGAAAATGTAAGCAGTGTAGGGGGCCCCAGAGTGACTGGGAATGACAGGCTACCCATAGCTGTGGTACATGCAAGGGCAAGACTTCTTGAGAGGTTGAGTGGAACACCTCCTTCTAGAAACAGgCAATATGGTAGAGGCTCGCTAGACATTGATGATATGAGTCATATTCACTCCATTGACGAAGAGAGTAGTGAATCATCAAGTGCAGGTTTAGCCGGCAGCATTCCACTAATGTACTTGACTTCCCAAATTGAACGGTCCCAGCTTCTGCAAGAAGTGAACAAAAAGCCACCTGGACTCACACAGGAGGCTGTGAACTGTTTGCATATGGAAGTCTACAGTAGCAGAGGAACCAGAGAGGAAGAATTGGAGTCTAGAGTACTGCAGGATTGTGGGATATGCTTGGAAACTTTTGTAGATGGAGATGAACTGATACGCCTGCCATGTAGACACAAATTTCACTCAGCTTGTTTGGATCCTTGGGTTCGCAAATGTGGGGACTGTCCCTTCTGCAGAAGAGGTATATAG 807 0.461 MTSASELFHNRRFRLGRTTNDLGFDSLPDRDLHLDFNNRHHHHHHLHDVRGGETVRRSTPMRRLCHRCSYSERAAGRFDLRNSRFLSDNANASENVSSVGGPRVTGNDRLPIAVVHARARLLERLSGTPPSRNRQYGRGSLDIDDMSHIHSIDEESSESSSAGLAGSIPLMYLTSQIERSQLLQEVNKKPPGLTQEAVNCLHMEVYSSRGTREEELESRVLQDCGICLETFVDGDELIRLPCRHKFHSACLDPWVRKCGDCPFCRRGI 268
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto10g0347 268 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 179 268 IPR013083 -
Sto10g0347 268 ProSiteProfiles Zinc finger RING-type profile. 224 265 IPR001841 -
Sto10g0347 268 SUPERFAMILY RING/U-box 223 267 - -
Sto10g0347 268 SMART ring_2 224 264 IPR001841 -
Sto10g0347 268 CDD RING-H2_PA-TM-RING 223 265 - -
Sto10g0347 268 Pfam Ring finger domain 223 265 IPR001841 -
Sto10g0347 268 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RHY1A-RELATED 1 268 - -
Sto10g0347 268 PANTHER SI:CH211-59O9.10 1 268 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto10g0347 Sto-Chr10 2761814 2764592 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto10g0347 1 268 C3H Transcription Factor Family AT1G49850 41.328 2.86e-42 143
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto10g0347 - - jre:108996295 241.506
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto10g0347 10 2761814 2764592 Sto10g0347 10 2761814 2764592 ECH