Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto10g0333 ATGTTGGGCTTTCTAAGGCTGAGCATTGATAAATTAAAACCTGAGAAGGAGCTTCAACGGGCAAAGGCTGAAATACTTCGGcggaaatttaaaattagagatCTGTTTCGACATCTGGATACTCTGTGTGCTGAAGGAAAGCTTCCAGAATCTTTGTTTGATTCTGATGGAGAGATTGACAGTGAGGATATATTCTGTTCAAAATGTGGGTCCAAAGACCTGAGCACTGATAATGATATAATTCTCTGTGATGGTGCTTGCGACCGCGGATTTCACCAGTTATGTTTGGAACCTCCGTTGTTAACTGAAAACATTCCACCTGACAATGAGAGTTGGCTATGCCCTGGATGTGATTGCAAAGATGACTGTATTGAACTCCTTAATGAATCCTTTGGAATGAATCTCTCTATTGGTGACACTTGGGAGAGGATTTTTCCTGAAGCAGCTGCAGCTGCTGGAAATAATGTGGATCACAACTCAGGACTTCCTTCAGAGGattctgatgatgatgattataaTCCTGATGTTTCAGAAGATAAAGAGATAAAGGGAGATGAATCAAATTTTGATGAATCTGAGTATGCTTCTGCTTCTGAATCTGAGTATGCTTCTGCTTctgaaaaattggaaaattcACGTAATGAGGATCAGTACTTAGGCCTTCCTTCTGATGATTCAGAGGATGACGATTATGATCCCAATGCTCTgaatattgacaaaaaaatcaatGAAGAAAGTTCAAGCAGTGATTTCACATCTGATTCTGAGGATCTTGCTACTACAATTAAGGATAACATGTTTTCTGAACAAGATGAAGATCCTTTATCTACATCCTTAGGCGATAGTAAGCAGTTTAAAGGTTCTGGCAGACAAAGAGGAAAAGCTGGTAAGAAGCAAACTCTAGCTGATGAACTATCATCTTTACTAGAGTCTGATCCTGGGCAAGAGGGCTCCTCTCCCATTTCTGCCAAAAGAAATGTGGAAAGGTTGGACTACAAAAAGCTGTATGATGTGAGTGCCCTTTCATGCCATAAGGAAACTTACCAAAACACTGAGTCTGATACCAGCGATGATGAAGATTGGACTGATAATGCTACTGCAAGTAGAAGGAAGAAACTCACTTGTAAAGTGACTCCAGTGTCAACAAATGGAAAAGCCTCAACAGTGGACCACACACAGAGAGAAACTGCACCTAGTCCTAGTAGATGTAAGAGACAGAATAAAGTTGAGAATACAAATAATACACCCACTAAATCACTTGAAGGCTCTAGGATATCTAGTTCCGGTAATAAAAAACATGGATCTTCAACTTACAAAAAGCTTGGGGAAGCTGTAGTTCAGAGGCTTTACAAGTCCTTTGAAGAAAATCGATATCCAGACCGAGCCACAAAAGAAAGCTTGGCACAAGAACTTGGACTCACTTTTCGACAGGTTGACAAATGGTTTACAAATACTCGTTGGAGCCATCGGAATTCACCACAAACAGAAGTAGGCCCTGGTAGGAAGAAAGTTGCTTTGGAGCAGGCTGCCTGCTGCAAAGCTGAAAATCAGGAATCACTTGGTGATAAGGATAGTGACTGTGAATTGGTGTCTCAGGAGTGTAGTGGAGAAAAATTGAAAACCCCAAGCAGTAGAAAGATGAAGCGTGAGCCAGATCCCCAAGCATCTGATTCAAATCTTGAAGTTGTTAATGTAACAACACAGCCTCCTGCTGGATCATCGGGAGCTCAAGTagtgcaaaaagaaaaagTGTTCAAGTGTTCATTCAGAAGGTTGAGATCTTTTGAGGTGTTCATCTCAGGTTAG 1806 0.3942 MLGFLRLSIDKLKPEKELQRAKAEILRRKFKIRDLFRHLDTLCAEGKLPESLFDSDGEIDSEDIFCSKCGSKDLSTDNDIILCDGACDRGFHQLCLEPPLLTENIPPDNESWLCPGCDCKDDCIELLNESFGMNLSIGDTWERIFPEAAAAAGNNVDHNSGLPSEDSDDDDYNPDVSEDKEIKGDESNFDESEYASASESEYASASEKLENSRNEDQYLGLPSDDSEDDDYDPNALNIDKKINEESSSSDFTSDSEDLATTIKDNMFSEQDEDPLSTSLGDSKQFKGSGRQRGKAGKKQTLADELSSLLESDPGQEGSSPISAKRNVERLDYKKLYDVSALSCHKETYQNTESDTSDDEDWTDNATASRRKKLTCKVTPVSTNGKASTVDHTQRETAPSPSRCKRQNKVENTNNTPTKSLEGSRISSSGNKKHGSSTYKKLGEAVVQRLYKSFEENRYPDRATKESLAQELGLTFRQVDKWFTNTRWSHRNSPQTEVGPGRKKVALEQAACCKAENQESLGDKDSDCELVSQECSGEKLKTPSSRKMKREPDPQASDSNLEVVNVTTQPPAGSSGAQVVQKEKVFKCSFRRLRSFEVFISG 601
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto10g0333 601 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 58 114 IPR013083 -
Sto10g0333 601 SUPERFAMILY Homeodomain-like 428 492 IPR009057 -
Sto10g0333 601 ProSitePatterns Zinc finger PHD-type signature. 66 117 IPR019786 -
Sto10g0333 601 MobiDBLite consensus disorder prediction 248 285 - -
Sto10g0333 601 Pfam Homeodomain 445 490 IPR001356 GO:0003677
Sto10g0333 601 MobiDBLite consensus disorder prediction 176 190 - -
Sto10g0333 601 MobiDBLite consensus disorder prediction 532 577 - -
Sto10g0333 601 MobiDBLite consensus disorder prediction 191 205 - -
Sto10g0333 601 ProSiteProfiles Zinc finger PHD-type profile. 63 120 IPR019787 -
Sto10g0333 601 PANTHER HOMEOBOX PROTEIN HAT3.1 6 549 - -
Sto10g0333 601 MobiDBLite consensus disorder prediction 375 435 - -
Sto10g0333 601 ProSiteProfiles 'Homeobox' domain profile. 446 492 IPR001356 GO:0003677
Sto10g0333 601 SMART PHD_3 65 118 IPR001965 -
Sto10g0333 601 MobiDBLite consensus disorder prediction 343 439 - -
Sto10g0333 601 CDD homeodomain 446 492 IPR001356 GO:0003677
Sto10g0333 601 SUPERFAMILY FYVE/PHD zinc finger 55 123 IPR011011 -
Sto10g0333 601 SMART HOX_1 434 496 IPR001356 GO:0003677
Sto10g0333 601 Coils Coil 195 215 - -
Sto10g0333 601 Gene3D - 428 497 - -
Sto10g0333 601 PANTHER POLYCOMB-LIKE TRANSCRIPTION FACTOR 6 549 - -
Sto10g0333 601 MobiDBLite consensus disorder prediction 532 555 - -
Sto10g0333 601 Pfam PHD-finger 65 120 IPR019787 -
Sto10g0333 601 MobiDBLite consensus disorder prediction 557 575 - -
Sto10g0333 601 MobiDBLite consensus disorder prediction 152 300 - -
Sto10g0333 601 CDD PHD_PRHA_like 65 117 IPR045876 -
Sto10g0333 601 MobiDBLite consensus disorder prediction 233 247 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto10g0333 Sto-Chr10 2660583 2663805 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto10g0333 3 493 Homeobox Transcription Factor Family AT3G19510 48.126 4.13e-115 357
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-PHD Sto10g0333 PHD 8.5e-11 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto10g0333 - - cam:101500744 649.818