Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto10g0268 ATGTATAACATACATAACACCATGTCTCCTCAAGCCCAAGCTCAGGCTCAGGGTCAACAATCTTCTAATAGGCAAACGGACAAACAGAAATCCGTGATGGTGATGGAGCCTGCACATCCCACCACCAAATCACCAATCTTTCATGGAAGCGGTAGTACTGGCAGTGGTAGTGGTGGCAGTGCTGATTCAGATGATCATGATCAAATTTCGactgagagagagaggaggaagaagatgagaaaCATGTTTGGAACCCTTCATTCTATGCTCCCTCACCTTCATTCTaagGCAGACAAGATCACCATTGTGGATGAAGCAGTGAGCTACATCAAAGCCCTAGAGAAAACACTTGAAAATCTGGAGAAAGCGAAGGAAGAGAGGCTTAAATCTATGTCCACTACTACTTTAGGGGATTCCTCCTCTGAGAATACCTATTCAAGAGAGGCTTTCATGGCTGATCAAGCTGCATCACCTAATAATTCTGCCATTCCCATAAATTCAAATCCTTTACTCATCCCAAATTATCAAACATCCACAGGATTTGAAACCTGGTTCTCTCCAAATCTTGTGTTGAATGTTTCTGGTGAAGAAGCTCAGTTCAATATATGTTCTACTAAGAATCCATGTCTCTTCACCAACATCTGCTTCGTTCTTGACAAGCACAATATCGAGGTTCTGTATGCTCATATCTCGTCTCGCGATAATCAGAGGTTCTATATGGTTCAAGCACATGCAAACAAAGACTCAGCTGCATTTCCTGTGGAGCAAAAATTCATTCAAGCAGCTCATGAAATTGTGCCATtgctattttaa 813 0.3998 MYNIHNTMSPQAQAQAQGQQSSNRQTDKQKSVMVMEPAHPTTKSPIFHGSGSTGSGSGGSADSDDHDQISTERERRKKMRNMFGTLHSMLPHLHSKADKITIVDEAVSYIKALEKTLENLEKAKEERLKSMSTTTLGDSSSENTYSREAFMADQAASPNNSAIPINSNPLLIPNYQTSTGFETWFSPNLVLNVSGEEAQFNICSTKNPCLFTNICFVLDKHNIEVLYAHISSRDNQRFYMVQAHANKDSAAFPVEQKFIQAAHEIVPLLF 270
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto10g0268 270 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 63 113 IPR011598 GO:0046983
Sto10g0268 270 PANTHER - 16 267 IPR044278 GO:0003700|GO:0006355|GO:0009960
Sto10g0268 270 MobiDBLite consensus disorder prediction 1 30 - -
Sto10g0268 270 Coils Coil 103 130 - -
Sto10g0268 270 MobiDBLite consensus disorder prediction 1 73 - -
Sto10g0268 270 CDD bHLH_AtbHLH_like 68 121 IPR045239 -
Sto10g0268 270 PANTHER TRANSCRIPTION FACTOR BHLH95 16 267 - -
Sto10g0268 270 MobiDBLite consensus disorder prediction 45 64 - -
Sto10g0268 270 Pfam Helix-loop-helix DNA-binding domain 71 114 IPR011598 GO:0046983
Sto10g0268 270 SMART finulus 69 119 IPR011598 GO:0046983
Sto10g0268 270 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 70 137 IPR036638 GO:0046983
Sto10g0268 270 Gene3D - 65 136 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto10g0268 Sto-Chr10 2162532 2164297 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto10g0268 37 246 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G49770 38.247 1.48e-42 145
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Sto10g0268 HLH 1.3e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto10g0268 - - rcu:8275281 192.971