Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto10g0267 ATGGTGATGGAGCCTGCACGTCCCACCACCAAATTACCAACCTTTCATGGAAGTGGTAGTCTTAGTGGAGGCGGTGCTGATTCAGATGATCATGATAACATTTGGactgagagagagaggaggaggaagatgagAGACATGTTTGGAATCCTTCATTCTATGCTTCCTCACCTTCATtctaagGCAGACAAGACCACCATTGTGGAAGAAGCGGTGAGCTACATCAAAACCCTAGAGGAAACAGTTGAAAATTTGGAGAAAGTGAAGGAAGAGAGGCTGAAATCTATGTCCACTACTACTTTAGGGAATCCCTCCTCTGAGAATACCTATTCAAGAGAGGCTTTCATGGCTGATCAAGCTGCAGAACTTAATAATTCTGCCATTCCCATAAATTCAAATCCTTTACTCATCCCAAATTACCAAACATCCACAGGATTTGAAACTTGGTCCTCTCCAAATCTTGTTTTGAATGTTTCTGGTGAAGACGCCCAGTTCAGTATATGCTCTACCAAGAAGCCATGTCTCTTCACCACCATCTGCTTCGTTCTTGACAAGCACAATATCGAGGTTTTGTCTTCTCATATCTCGTCTCGCGATAATCAGAGGTTCTATATGGTTCAAGCACATACTTGTGCTAATTCTGTGACTCCATAG 654 0.4037 MVMEPARPTTKLPTFHGSGSLSGGGADSDDHDNIWTERERRRKMRDMFGILHSMLPHLHSKADKTTIVEEAVSYIKTLEETVENLEKVKEERLKSMSTTTLGNPSSENTYSREAFMADQAAELNNSAIPINSNPLLIPNYQTSTGFETWSSPNLVLNVSGEDAQFSICSTKKPCLFTTICFVLDKHNIEVLSSHISSRDNQRFYMVQAHTCANSVTP 217
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto10g0267 217 CDD bHLH_AtbHLH_like 33 86 IPR045239 -
Sto10g0267 217 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 28 78 IPR011598 GO:0046983
Sto10g0267 217 Coils Coil 68 95 - -
Sto10g0267 217 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 34 102 IPR036638 GO:0046983
Sto10g0267 217 PANTHER - 23 213 IPR044278 GO:0003700|GO:0006355|GO:0009960
Sto10g0267 217 MobiDBLite consensus disorder prediction 1 32 - -
Sto10g0267 217 PANTHER TRANSCRIPTION FACTOR BHLH95 23 213 - -
Sto10g0267 217 Pfam Helix-loop-helix DNA-binding domain 37 79 IPR011598 GO:0046983
Sto10g0267 217 Gene3D - 30 100 IPR036638 GO:0046983
Sto10g0267 217 SMART finulus 36 84 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto10g0267 Sto-Chr10 2157354 2159178 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto10g0267 27 215 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G49770 39.381 1.06e-41 141
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Sto10g0267 HLH 1e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto10g0267 - - rcu:8275281 200.29
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto10g0267 10 2157354 2159178 Sto10g0267 10 2157354 2159178 ECH