Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto10g0266 ATGTATAACATACATAACACCATGTCTTCTCAAGCCCAAGCTCAGGCTCAGGGTCAACAATCTTCTAATAGGCAAACGGACAAACAGAAATCCGTGATGGTGATGGAGCCTGCACATCCCACCACCAAATCACCAATCTTTCATGGAAGCGGTAGTACTGGCAGTGGTAGTGGTGGCAGTGCTGATTCAGATGATCATGATCAAATTTCAactgagagagagaggaggaagaagatgagaaaCATGTTTGGAACCCTTCATTCTATGCTCCCTCACCTTCATTCTaagGCAGACAAGATCACCATTGTGGATGAAGCAGTGAGCTACATCAAAGCCCTAGAGAAAACACTTGAAAATCTGGAGAAAGCGAAGGAAGAGAGGCTTAAATCTATGTCCACTACTACTTTAGGGGATTCCTCCTCTGAGAATACCTATTCAAGAGAGGCTTCCATGGCTGATCAAGCTGCAGCACCTAATAATTCTGCCATTCCCATAAATTCAAATCCTTTACTCATCCCAAATTATCAAACATCCACAGGATTTGAAACCTAG 552 0.4058 MYNIHNTMSSQAQAQAQGQQSSNRQTDKQKSVMVMEPAHPTTKSPIFHGSGSTGSGSGGSADSDDHDQISTERERRKKMRNMFGTLHSMLPHLHSKADKITIVDEAVSYIKALEKTLENLEKAKEERLKSMSTTTLGDSSSENTYSREASMADQAAAPNNSAIPINSNPLLIPNYQTSTGFET 183
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto10g0266 183 Gene3D - 65 136 IPR036638 GO:0046983
Sto10g0266 183 MobiDBLite consensus disorder prediction 1 30 - -
Sto10g0266 183 PANTHER TRANSCRIPTION FACTOR BHLH95 13 169 - -
Sto10g0266 183 PANTHER - 13 169 IPR044278 GO:0003700|GO:0006355|GO:0009960
Sto10g0266 183 MobiDBLite consensus disorder prediction 45 64 - -
Sto10g0266 183 SMART finulus 69 119 IPR011598 GO:0046983
Sto10g0266 183 MobiDBLite consensus disorder prediction 128 162 - -
Sto10g0266 183 Pfam Helix-loop-helix DNA-binding domain 71 114 IPR011598 GO:0046983
Sto10g0266 183 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 63 113 IPR011598 GO:0046983
Sto10g0266 183 Coils Coil 103 130 - -
Sto10g0266 183 MobiDBLite consensus disorder prediction 1 73 - -
Sto10g0266 183 CDD bHLH_AtbHLH_like 68 121 IPR045239 -
Sto10g0266 183 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 70 137 IPR036638 GO:0046983
Sto10g0266 183 MobiDBLite consensus disorder prediction 132 162 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto10g0266 Sto-Chr10 2151712 2152920 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto10g0266 37 155 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G49770 38.710 1.72e-21 87.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Sto10g0266 HLH 6.6e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto10g0266 - - nta:107795087 106.301